PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G049300.1
Common NameB456_001G049300, LOC105770356
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 282aa    MW: 31263.6 Da    PI: 6.3148
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G049300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-05828323
                        ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                        C +C+++Fs+   L +H+r H
  Gorai.001G049300.1  8 CRICDRRFSNGKALGVHMRFH 28
                        *******************99 PP
2zf-C2H211.50.00092153175123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ykC+ C+ +F+++  L  H  +H
  Gorai.001G049300.1 153 YKCETCNITFRSHQALGGHTASH 175
                         9*************999998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.078628IPR007087Zinc finger, C2H2
SMARTSM003550.63628IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.31E-8728No hitNo description
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
PfamPF139120.0027828IPR007087Zinc finger, C2H2
SuperFamilySSF576671.31E-8148175No hitNo description
SMARTSM003550.075153175IPR015880Zinc finger, C2H2-like
PfamPF139127.0E-6153175IPR007087Zinc finger, C2H2
PROSITE profilePS501579.369153180IPR007087Zinc finger, C2H2
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
SuperFamilySSF576674.55E-6202232No hitNo description
SMARTSM003550.059205227IPR015880Zinc finger, C2H2-like
PfamPF139127.0E-9205227IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.154205232IPR007087Zinc finger, C2H2
PROSITE patternPS000280207227IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDQYPKACRI CDRRFSNGKA LGVHMRFHFP NFSIPPSSSS SNPPLSSLTS TKHELSTDST  60
ESPENPSGKR SKQLPKFSSD MAMNDSPSDS VSSPFSMEDA ALCLLMLSRT ERTDNPKLTQ  120
GNEISDHGAG FDYEKDEEDG EFFTAAKAHP KCYKCETCNI TFRSHQALGG HTASHNFKNK  180
KIAQEEEAEN GGDATDHKIH QQRIFECEFC DRVFQSGQAL GGHKKIHFGY SPSVTHNRIS  240
IKFKPTVQPF DLNLPPSEQD DDEVSLAQNT VPQPSIYDKA I*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446981.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A0D2N5L90.0A0A0D2N5L9_GOSRA; Uncharacterized protein
STRINGGorai.001G049300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16232814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.14e-22C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]