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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G049200.1 | ||||||||
Common Name | B456_001G049200, LOC105770346 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 206aa MW: 22589.9 Da PI: 8.4909 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00024 | 8 | 28 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C ++Fs+ L H+++H Gorai.001G049200.1 8 CTICLRRFSNGKALGAHMKSH 28 ********************9 PP | |||||||
2 | zf-C2H2 | 14.2 | 0.00012 | 150 | 172 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+++F+++ L H +H Gorai.001G049200.1 150 YKCGTCNRTFRSHQALGGHRASH 172 9***************9999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 2.8 | 6 | 28 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.162 | 6 | 33 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.07E-7 | 7 | 28 | No hit | No description |
Pfam | PF13912 | 5.2E-7 | 7 | 28 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.07E-7 | 145 | 172 | No hit | No description |
Pfam | PF13912 | 2.1E-8 | 149 | 173 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.063 | 150 | 172 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.076 | 150 | 177 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 152 | 172 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MDQNSRLCTI CLRRFSNGKA LGAHMKSHFG RFSSPSSTSS SNPPLASTKH ELSTESTESA 60 KYPTGKRSKT LRKFSSNMAM TGSPSDSVSS PLSVEDAALC LLMLSRDQRS NNPKLTQGYE 120 ISDAGVGSDN EKDEEDDEFF GAAKVHPKRY KCGTCNRTFR SHQALGGHRA SHKLKSKKIS 180 QEEEDDDENG GDATDHKIHQ QRTYL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX615837 | 0.0 | JX615837.1 Gossypium hirsutum clone NBRI_GE60071 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012446969.1 | 1e-152 | PREDICTED: zinc finger protein ZAT9-like | ||||
TrEMBL | A0A0D2LUY4 | 1e-150 | A0A0D2LUY4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G049200.1 | 1e-151 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16232 | 8 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 3e-13 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G049200.1 |
Entrez Gene | 105770346 |
Publications ? help Back to Top | |||
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