PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G047300.1 | ||||||||
Common Name | B456_001G047300, LOC105784269 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 248aa MW: 27426.9 Da PI: 8.4509 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.4 | 1.6e-10 | 70 | 121 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ a +e+Er RR+++ + +++Lr+llP+ + ++K ++ +Av+YI ++ Gorai.001G047300.1 70 KKIARKEIERERRQQMGKLYQKLRSLLPPeS---IKGKRAASDHMNEAVNYITYM 121 577899***********************66...9*****************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.66E-11 | 67 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.03 | 69 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.1E-8 | 70 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.37E-6 | 70 | 125 | No hit | No description |
Pfam | PF00010 | 9.2E-8 | 71 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0086 | 75 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MFPSDQIDDY LYEISDIPHH EDFVRQNLTS GESVEGSHLT RRTGKGRGLK SLAVANNNDA 60 NYAVSANDAK KIARKEIERE RRQQMGKLYQ KLRSLLPPES IKGKRAASDH MNEAVNYITY 120 MKKRIGELSI KRDKVKKLSN RSALDLGSSS ASSSGINSCV VVHPFRGGVE IMISSGFGDQ 180 SWHLSTVLQA ILEEGLDVVR CVSSQTIEGL LHTVQSEVTD PTQIDLSRLQ TKLNDLISYY 240 DNAGCGR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012465591.1 | 0.0 | PREDICTED: transcription factor bHLH118-like | ||||
TrEMBL | A0A0D2PLW0 | 0.0 | A0A0D2PLW0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G047300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17143 | 7 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51780.1 | 4e-26 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G047300.1 |
Entrez Gene | 105784269 |
Publications ? help Back to Top | |||
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