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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Gorai.001G040700.1 |
| Common Name | B456_001G040700, LOC105777249 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
C3H |
| Protein Properties |
Length: 358aa MW: 40286.9 Da PI: 7.4797 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.001G040700.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 21.5 | 4.1e-07 | 94 | 118 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt+ C f+ GtC+ G+ C+FaHg
Gorai.001G040700.1 94 FKTRMCAKFRL-GTCRNGEGCNFAHG 118
69*********.*************8 PP
|
| 2 | zf-CCCH | 28.3 | 3e-09 | 155 | 177 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25
++lC+ ++ + +C+yGdrC+F H
Gorai.001G040700.1 155 MKLCKKYYNGEECPYGDRCNFLH 177
689******66************ PP
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| 3 | zf-CCCH | 41.1 | 2.9e-13 | 240 | 266 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC + tG+C++G++C+FaHg+
Gorai.001G040700.1 240 WKTKLCTKWETTGHCPFGEKCHFAHGQ 266
8************************97 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:4.10.1000.10 | 2.4E-14 | 89 | 126 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 7.85E-8 | 91 | 124 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.22 | 93 | 120 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.067 | 93 | 119 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.023 | 152 | 180 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.27E-7 | 152 | 179 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0015 | 152 | 179 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 9.7E-7 | 155 | 177 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 6.6E-9 | 155 | 178 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.5E-16 | 237 | 270 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.96E-10 | 238 | 270 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.723 | 239 | 267 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.3E-6 | 239 | 266 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.9E-10 | 240 | 266 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 358 aa
Download sequence Send
to blast |
MNYPESRSSF MRTPQSTYAG SDAIGIWPEF PMNDWQFDPH SEFEQQQQQQ QQSPPFKRPR 60
HSEDNQSNIV QCTPTIPRMP SNPPTNKGTT NIFFKTRMCA KFRLGTCRNG EGCNFAHGIE 120
DLRQPPPNWQ ELVGGREEER PSGNWDDDQK IIHRMKLCKK YYNGEECPYG DRCNFLHEDP 180
AKFRDDMGRF RESSAISIGT TAPPAGHGTA SEQSEGNRPL NGGSSDAFRG NTKPVYPVYW 240
KTKLCTKWET TGHCPFGEKC HFAHGQTELQ GMNGRIDGDF GNMGSGLTRI GSVSTKIHNL 300
PANDPPPVTS SALSLDEKAQ AKNCLFKWKG PRKINRIYGD WLDDMPLVHN LPSQVES*
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| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HQ527761 | 1e-121 | HQ527761.1 Gossypium herbaceum clone NBRI_C_EYT27PB01BXVU7 simple sequence repeat marker, mRNA sequence. |
