PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G035700.3
Common NameB456_001G035700, LOC105771983
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 437aa    MW: 48012.4 Da    PI: 6.4698
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G035700.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.41e-073854182154
                         HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         k +yp++e++++L +++gL+ +q+ +WF N+R +
  Gorai.001G035700.3 385 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 418
                         469*****************************87 PP
2ELK28.82.9e-10339360122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELKh+L+++Y+++++++++E++
  Gorai.001G035700.3 339 ELKHELKQGYKEKIVDIREEIL 360
                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.6E-20171215IPR005540KNOX1
PfamPF037901.0E-17173214IPR005540KNOX1
SMARTSM012566.7E-29227282IPR005541KNOX2
PfamPF037917.3E-21231281IPR005541KNOX2
PfamPF037891.0E-6339360IPR005539ELK domain
PROSITE profilePS512139.969339359IPR005539ELK domain
SMARTSM011886.1E-4339360IPR005539ELK domain
PROSITE profilePS5007111.726359422IPR001356Homeobox domain
SuperFamilySSF466894.28E-16361425IPR009057Homeodomain-like
SMARTSM003894.7E-11361426IPR001356Homeobox domain
CDDcd000861.83E-11362423No hitNo description
Gene3DG3DSA:1.10.10.603.3E-25366423IPR009057Homeodomain-like
PfamPF059201.2E-17379418IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MAFHHSSTHL SQDLPLHHFT DQQQQQPNQT QQGDQLQETA APNWLNSALL RPQQPQPPQP  60
HPHFSHPNFL NLHTTTTASD STAASQAPNP MLSRSSSSLL HRNHSNVIDD AAAAAAAAVA  120
AAAVGGGVMA VESGDLKNSI SETMNNNKSE GVVVESGGGG GGDGIVNWQN ARYKAEILAH  180
PFYEQLLSAH VACLRIATPV DQLPRIDAQL AQSQHVVAKY SALGGGSQGL VSDDKELDQF  240
MTHYVLLLCS FKEQLQQHVR VHAMEAVMAC WEIEQSLQSL TGVSPGEGTG ATMSDDDDDQ  300
VDSDANLFDA SLDGTDSMGF GPLIPTESER SLMERVRHEL KHELKQGYKE KIVDIREEIL  360
RKRRAGKLPG DTTSVLKAWW QSHSKWPYPT EEDKARLVQE TGLQLKQINN WFINQRKRNW  420
HSNPSTSTVS KSKRKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1415435RKRNWHSNPSTSTVSKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448852.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X2
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A0D2PRD60.0A0A0D2PRD6_GOSRA; Uncharacterized protein
STRINGGorai.001G035700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-172KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]