PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G024300.2 | ||||||||
Common Name | B456_001G024300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 251aa MW: 27257.3 Da PI: 7.8019 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.7 | 8.2e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l+++v+ +G+g +W + + + g++R++k+c++rw++yl Gorai.001G024300.2 14 RGPWSPEEDATLKNYVQSHGTGgNWIALPLKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47 | 5.8e-15 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd ++ + q+G++ W++Ia+ ++ gRt++++k++w++ Gorai.001G024300.2 69 GGFTEEEDNIICSLYSQMGSR-WSLIASQLP-GRTDNDVKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.385 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-28 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.7E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.18E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 23.468 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 5.1E-14 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-13 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-25 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.29E-11 | 71 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MGRAPCCDKA NVKRGPWSPE EDATLKNYVQ SHGTGGNWIA LPLKAGLKRC GKSCRLRWLN 60 YLRPDIKHGG FTEEEDNIIC SLYSQMGSRW SLIASQLPGR TDNDVKNYWN TKLKKKLLAG 120 KSSFNVENNG GLLNANNNNI PTQPLPYNLD YSTTSLPILS DVSYGFSVSN CSTSQNMGLD 180 PVMQFSTPDT ITNLSQSGPN LDNSHNNIVV VSSSQEGSAL SDSTGPSFEF SHGDIKTSQG 240 LNQSVATNPY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-26 | 14 | 117 | 7 | 108 | B-MYB |
1h8a_C | 3e-26 | 14 | 117 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ459145 | 8e-71 | AJ459145.1 Gossypium hirsutum partial myb117 gene, clone pGhMYB117. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017639920.1 | 1e-165 | PREDICTED: transcription factor MYB36-like | ||||
TrEMBL | A0A0D2LTS6 | 0.0 | A0A0D2LTS6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G024300.1 | 1e-161 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 4e-71 | myb domain protein 84 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G024300.2 |
Publications ? help Back to Top | |||
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