PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 284aa MW: 30916.3 Da PI: 5.3129

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G024300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.5	1e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l+++v+ +G+g +W + + + g++R++k+c++rw++yl Gorai.001G024300.1 14 RGPWSPEEDATLKNYVQSHGTGgNWIALPLKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	46.8	7.1e-15	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd ++ + q+G++ W++Ia+ ++ gRt++++k++w++ Gorai.001G024300.1 69 GGFTEEEDNIICSLYSQMGSR-WSLIASQLP-GRTDNDVKNYWNT 111 569****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.385	9	62	IPR017930	Myb domain
SuperFamily	SSF46689	5.14E-28	11	109	IPR009057	Homeodomain-like
SMART	SM00717	6.8E-11	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-14	14	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.1E-24	15	69	IPR009057	Homeodomain-like
CDD	cd00167	1.69E-8	16	62	No hit	No description
PROSITE profile	PS51294	23.468	63	117	IPR017930	Myb domain
SMART	SM00717	5.1E-14	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	4.1E-13	69	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.5E-25	70	117	IPR009057	Homeodomain-like
CDD	cd00167	5.46E-11	71	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MGRAPCCDKA NVKRGPWSPE EDATLKNYVQ SHGTGGNWIA LPLKAGLKRC GKSCRLRWLN 60 YLRPDIKHGG FTEEEDNIIC SLYSQMGSRW SLIASQLPGR TDNDVKNYWN TKLKKKLLAG 120 KSSFNVENNG GLLNANNNNI PTQPLPYNLD YSTTSLPILS DVSYGFSVSN CSTSQNMGLD 180 PVMQFSTPDT ITNLSQSGPN LDNSHNNIVV VSSSQEGSAL SDSTGNGYGE DTGSIILMDD 240 QQFSYEFPYE FVNGVLAGPS FEFSHGDIKT SQGLNQSVAT NPY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-26	14	117	7	108	B-MYB
1h8a_C	5e-26	14	117	27	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ459145	9e-71	AJ459145.1 Gossypium hirsutum partial myb117 gene, clone pGhMYB117.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012492688.1	0.0	PREDICTED: transcription factor MYB3-like
TrEMBL	A0A0D2N4Q1	0.0	A0A0D2N4Q1_GOSRA; Uncharacterized protein
STRING	Gorai.001G024300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22115	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	1e-70	myb domain protein 84

Link Out ? help Back to Top
Phytozome	Gorai.001G024300.1
Entrez Gene	105804536

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]