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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gorai.001G020600.1 |
| Common Name | B456_001G020600, LOC105801260 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
MYB |
| Protein Properties |
Length: 272aa MW: 30480.5 Da PI: 7.8485 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.001G020600.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 46.6 | 8.1e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+ Ed++l +++ +G g W+ +++ g++R++k+c++rw++yl
Gorai.001G020600.1 14 KGAWTALEDKILTSYIHVHGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 61
79********************************************97 PP
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| 2 | Myb_DNA-binding | 50.9 | 3.6e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w++
Gorai.001G020600.1 67 RGNISHDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111
78999*****************.*********.************87 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 272 aa
Download sequence Send
to blast |
MGRSPCCSKE GLNKGAWTAL EDKILTSYIH VHGEGKWRNL PKRAGLKRCG KSCRLRWLNY 60
LRPDIKRGNI SHDEEELIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT TLGKRAKAQA 120
SIEAKTIPTE SRLNKPSKSS TKIEVIRTKA IRCSSKVMVP LQPPATHQHG QHHYTNNNEE 180
MGGGISTIEA HNGIQMLESL YSDGGSNLLS FEINELLKSH DGGEFEENPM QQHFPLGEAM 240
LKDWSTCPCL DDNGATDLES LAFLLDTDEW P*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Highly expressed from the very early stages of embryogenesis to the globular stage, decreases rapidly from the late heart-torpedo stage and did not persist after the completion of embryogenesis. |
| Uniprot | TISSUE SPECIFICITY: Expressed at a high level in immature siliques and at a lower level in flowers. Undetected in young seedlings, roots, leaves and inflorescence stems. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF336284 | 0.0 | AF336284.1 Gossypium hirsutum GHMYB36 (ghmyb36) mRNA, complete cds. |
| Publications
? help Back to Top |
- Paterson AH, et al.
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
Nature, 2012. 492(7429): p. 423-7
[PMID:23257886] - Coego A, et al.
The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
Plant J., 2014. 77(6): p. 944-53
[PMID:24456507] - Liu C,Jun JH,Dixon RA
MYB5 and MYB14 Play Pivotal Roles in Seed Coat Polymer Biosynthesis in Medicago truncatula.
Plant Physiol., 2014. 165(4): p. 1424-1439
[PMID:24948832] - Zhu Z, et al.
Characterization of the cis elements in the proximal promoter regions of the anthocyanin pathway genes reveals a common regulatory logic that governs pathway regulation.
J. Exp. Bot., 2015. 66(13): p. 3775-89
[PMID:25911741] - Liu Y,Shi Z,Maximova SN,Payne MJ,Guiltinan MJ
Tc-MYBPA an Arabidopsis TT2-like transcription factor and functions in the regulation of proanthocyanidin synthesis in Theobroma cacao.
BMC Plant Biol., 2015. 15: p. 160
[PMID:26109181] - Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
Plant Physiol. Biochem., 2016. 102: p. 70-9
[PMID:26913794] - Li Y, et al.
Two IIIf Clade-bHLHs from Freesia hybrida Play Divergent Roles in Flavonoid Biosynthesis and Trichome Formation when Ectopically Expressed in Arabidopsis.
Sci Rep, 2016. 6: p. 30514
[PMID:27465838] - Li C,Zhang B,Chen B,Ji L,Yu H
Site-specific phosphorylation of TRANSPARENT TESTA GLABRA1 mediates carbon partitioning in Arabidopsis seeds.
Nat Commun, 2018. 9(1): p. 571
[PMID:29422671]
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