PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 294aa MW: 33321.5 Da PI: 8.9025

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G020500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.7	1.3e-13	29	76	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT +Ed++l+ +++ +G g W+ +++ g++R+ +c++rw +yl Gorai.001G020500.1 29 KGAWTDWEDKILASYINVHGEGKWRNLPKRAGLKRCCRSCRLRWVNYL 76 79****************************99**********97 PP
2	Myb_DNA-binding	50.2	5.8e-16	82	126	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w++ Gorai.001G020500.1 82 RGNISHDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNST 126 78999***************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.7E-20	20	79	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.894	24	76	IPR017930	Myb domain
SuperFamily	SSF46689	3.59E-26	26	123	IPR009057	Homeodomain-like
SMART	SM00717	2.6E-11	28	78	IPR001005	SANT/Myb domain
Pfam	PF00249	4.2E-12	29	76	IPR001005	SANT/Myb domain
CDD	cd00167	3.22E-8	31	76	No hit	No description
PROSITE profile	PS51294	24.186	77	131	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.0E-24	80	130	IPR009057	Homeodomain-like
SMART	SM00717	6.4E-15	81	129	IPR001005	SANT/Myb domain
Pfam	PF00249	3.8E-14	82	126	IPR001005	SANT/Myb domain
CDD	cd00167	4.64E-10	86	127	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MDLYKQRERV GEIRSMGKSS CCSKEGLKKG AWTDWEDKIL ASYINVHGEG KWRNLPKRAG 60 LKRCCRSCRL RWVNYLRPDI KRGNISHDEE ELIIRLHNLL GNRWSLIAGR LPGRTDNEIK 120 NYWNSTLSKR TKAQASIKYP RSSNFTHKTI PIESKLKESS KRSAIQTKAI GGSSKVMVPT 180 QPPTSQDIDK LRDGKLYSTN NSQEMGGDIA TVEAHNGTQV LDSLNSDGGS DLLSFEINEL 240 RKASDGNFEE NRMQLLPFDE AMFEDWTTYP YLNDNAATGW DSLAFLIDSN DWP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-21	27	131	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF336284	1e-130	AF336284.1 Gossypium hirsutum GHMYB36 (ghmyb36) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012487897.1	0.0	PREDICTED: transcription repressor MYB6-like
TrEMBL	A0A0D2QJI6	0.0	A0A0D2QJI6_GOSRA; Uncharacterized protein
STRING	Gorai.001G020500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM37233	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	6e-59	MYB family protein

Link Out ? help Back to Top
Phytozome	Gorai.001G020500.1
Entrez Gene	105801103

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]