PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G020500.1
Common NameB456_001G020500, LOC105801103
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 294aa    MW: 33321.5 Da    PI: 8.9025
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G020500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-132976148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT +Ed++l+ +++ +G g W+  +++ g++R+  +c++rw +yl
  Gorai.001G020500.1 29 KGAWTDWEDKILASYINVHGEGKWRNLPKRAGLKRCCRSCRLRWVNYL 76
                        79******************************99************97 PP
2Myb_DNA-binding50.25.8e-1682126147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w++ 
  Gorai.001G020500.1  82 RGNISHDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNST 126
                         78999*****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.7E-202079IPR009057Homeodomain-like
PROSITE profilePS5129411.8942476IPR017930Myb domain
SuperFamilySSF466893.59E-2626123IPR009057Homeodomain-like
SMARTSM007172.6E-112878IPR001005SANT/Myb domain
PfamPF002494.2E-122976IPR001005SANT/Myb domain
CDDcd001673.22E-83176No hitNo description
PROSITE profilePS5129424.18677131IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.0E-2480130IPR009057Homeodomain-like
SMARTSM007176.4E-1581129IPR001005SANT/Myb domain
PfamPF002493.8E-1482126IPR001005SANT/Myb domain
CDDcd001674.64E-1086127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDLYKQRERV GEIRSMGKSS CCSKEGLKKG AWTDWEDKIL ASYINVHGEG KWRNLPKRAG  60
LKRCCRSCRL RWVNYLRPDI KRGNISHDEE ELIIRLHNLL GNRWSLIAGR LPGRTDNEIK  120
NYWNSTLSKR TKAQASIKYP RSSNFTHKTI PIESKLKESS KRSAIQTKAI GGSSKVMVPT  180
QPPTSQDIDK LRDGKLYSTN NSQEMGGDIA TVEAHNGTQV LDSLNSDGGS DLLSFEINEL  240
RKASDGNFEE NRMQLLPFDE AMFEDWTTYP YLNDNAATGW DSLAFLIDSN DWP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-212713125128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3362841e-130AF336284.1 Gossypium hirsutum GHMYB36 (ghmyb36) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012487897.10.0PREDICTED: transcription repressor MYB6-like
TrEMBLA0A0D2QJI60.0A0A0D2QJI6_GOSRA; Uncharacterized protein
STRINGGorai.001G020500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3723322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.16e-59MYB family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]