PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G017000.2
Common NameB456_001G017000, LOC105797241
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 1069aa    MW: 119590 Da    PI: 6.8838
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G017000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.16.8e-23126227199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae++       + +++  ++l  +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +
  Gorai.001G017000.2 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELAARDLHENTWTFRHIYRGQPKRHLLTTGWSVFVSNKRLFAGDSVLFIR 214
                         99*****************************954.4444.38************************************************7 PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                         d++s+f  +++++r+
  Gorai.001G017000.2 215 DEKSQF--LLGIRRA 227
                         766666..9999997 PP
2Auxin_resp124.85.7e-41252334183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+++s+F+++YnPras+seFvv+++k++ka++++vs+GmRf+m+fete++  rr++Gt++g+sdldpvrW+nS+Wr+L+
  Gorai.001G017000.2 252 AAHAAANNSPFTIFYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEECGVRRYMGTITGISDLDPVRWKNSQWRNLQ 334
                         79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.19E-43116255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.8E-42118241IPR015300DNA-binding pseudobarrel domain
CDDcd100179.17E-20125226No hitNo description
SMARTSM010195.7E-24126228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.294126228IPR003340B3 DNA binding domain
PfamPF023624.7E-21126227IPR003340B3 DNA binding domain
PfamPF065074.9E-36252334IPR010525Auxin response factor
PROSITE profilePS5174523.30910001068IPR000270PB1 domain
SuperFamilySSF542771.77E-510161068No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1069 aa     Download sequence    Send to blast
MKAPPNGFLA NPAEGERKSI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
TDFVPSYPNL PSKLICMLHN VTLHADLETD EVYAQMTLQP VNKYDREALL ASDMGLKQSR  120
QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELAARD LHENTWTFRH  180
IYRGQPKRHL LTTGWSVFVS NKRLFAGDSV LFIRDEKSQF LLGIRRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVVPLA KYNKAMYTQV SLGMRFRMMF  300
ETEECGVRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERPTRVS IWDIEPVVTP  360
FYICPPPFFR PRFPKQPGMP DNDNDVENAF KRAMPWLGDD FGMKDSPNSI FPGLSLVQWM  420
NMQQNNQLAA AQSGLFPSMV SSNPLHNSLG TDDPSKLLNF QAPVLPASNM QFNKANPNQV  480
NQLSHAPMTW PQQQQLQQLL QTPLNQNPLQ QQSQQQLQQR QSQLQPQSHL QQQPQPPLQQ  540
QQQQQQQQRQ QAQPQPQQQQ PPLQQLQQQQ RQQAQPQLLQ QQFLPAQVNN GIIASNQMPN  600
RNLHQPGVYS QVQQQQQQQQ ILTSNGQSTQ TTLPANKASY PLTSLAQDTQ IQQQVEQQPN  660
LVQSQQQQTQ LQQNLSQRSQ QQPQIQQLAQ QGLPEQQFQL LQKLQQQQQQ QQSSQQLLSP  720
TGSLSQSPVV QQQPMHQQNQ PMQQVPLSQS QQTLGSNGFS TSMLMQPQQL VVSQSQNQNK  780
PLMAMRTHSG LTDGDAPSCS TSPSTNNCQV SPSSFLSRSQ QVPSMVVTDP VVEPASTLVQ  840
ELQSKPDIRI KHELLASKGP DQSKYKSTVT DQLEASSSGT SYCLDAGTIQ HNFSLPTFLE  900
GDVQSHPRNN LPFSANIDGL APDTLLSRGY DSQKDLQNLL SNYGSNPRDI DTELSTAAIS  960
PQSFGVPNIP FKTGCSNDVA INDAGVLNGG LWANQTQRMR TYTKVQKRGS VGRSIDVTRY  1020
KGYDELRHDL ARMFGIEGQM EDPQSSDWKL VYVDHENDIL LVGDDPWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1751535545388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482674.10.0PREDICTED: auxin response factor 7
TrEMBLA0A0D2QJA20.0A0A0D2QJA2_GOSRA; Auxin response factor
STRINGGorai.001G017000.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]