PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G010000.1
Common NameB456_001G010000, LOC105770214
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 255aa    MW: 28467.9 Da    PI: 7.4652
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G010000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-171462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W+++Ed  lv++++++G+g +W t +r+ g++R++k+c++rw++yl
  Gorai.001G010000.1 14 KGPWSPDEDNTLVNYIHKHGTGgNWITLPRKAGLKRCGKSCRLRWLNYL 62
                        79*********************************************97 PP
2Myb_DNA-binding44.73.1e-1469111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g +++eEd ++  +   lG++ W+ Ia+ ++ gRt++++k++w++
  Gorai.001G010000.1  69 GGFSEEEDNIICSLYSTLGSR-WSVIAAQLP-GRTDNDIKNHWNT 111
                         569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.178962IPR017930Myb domain
SuperFamilySSF466891.05E-2711109IPR009057Homeodomain-like
SMARTSM007171.8E-111364IPR001005SANT/Myb domain
PfamPF002491.1E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-231569IPR009057Homeodomain-like
CDDcd001672.62E-91662No hitNo description
PROSITE profilePS5129422.7963117IPR017930Myb domain
SMARTSM007177.2E-1367115IPR001005SANT/Myb domain
PfamPF002497.0E-1369111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-2470117IPR009057Homeodomain-like
CDDcd001675.34E-1071111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MVRAPCCDKS NVRKGPWSPD EDNTLVNYIH KHGTGGNWIT LPRKAGLKRC GKSCRLRWLN  60
YLRPDIKHGG FSEEEDNIIC SLYSTLGSRW SVIAAQLPGR TDNDIKNHWN TKLKKKLLAA  120
KIKGGNNEIT TTISAAPFCK AVGSDGSSRT TSSSYMTDMK TYQKKYYEYP ALVLDQTDQF  180
SMPYLPFENN YGAAWCSNGV SNEGQGMMVD HFVDFEVDPQ HVLSGSSFQE ENINGVGDDP  240
WFGILSATHY NIFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27141177108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Accumulates in an adaxial ball-shaped set of cells in three to five cell layers around the L3 layer of the shoot apical meristem (SAM) in youg plantlets. In the inflorescence meristem, confined to the axils of flower primordia. {ECO:0000269|PubMed:16461581}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16461581}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5890444e-79JX589044.1 Gossypium hirsutum clone NBRI_GE23653 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446769.10.0PREDICTED: transcription factor RAX3-like
SwissprotQ9M2Y96e-71RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A0D2PK370.0A0A0D2PK37_GOSRA; Uncharacterized protein
STRINGGorai.001G010000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2448134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.11e-66myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  4. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]