PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G007000.2 | ||||||||
Common Name | B456_001G007000, LOC105787024 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 371aa MW: 40371.9 Da PI: 7.5001 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.7 | 0.00049 | 228 | 266 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Gorai.001G007000.2 228 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 266 6677889999999999998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.49 | 216 | 265 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.89E-10 | 226 | 276 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.36E-6 | 226 | 270 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.3E-7 | 230 | 272 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MNQGVLQSSP VQQLMAGNPD WWSINNAMRP PSTHHHHHHQ QTASPFFPFP PPQPPPPPAA 60 AAAAATFFPQ LIPTSTSSSS SWHDNNNQEV PEPWSQLLLG GLVGEEQATA LQHQASTGNN 120 NIMKQENYVY GHANEDYHHH HHHHYQGSKA TTNWSMATAS SSPKSCVTTS FNNNMLDFSS 180 NIKVDTATRQ HPPLMDPSPE CNSSTASGGA LKKTRVQPSA TQSTFKVRKE KLGDRITALH 240 QLVSPFGKTD TASVLLEAIG YIRFLQSQIE ALSLPYLGSD GSSGNMRQQQ QSVQGERNCI 300 FPEDPGQLLN EKCMKKRKGG PADLQDSNEE PKKNLKSRGL CLVPISCTLQ VGSDNGADYW 360 APPSLGGGFR * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ527261 | 1e-159 | HQ527261.1 Gossypium herbaceum clone NBRI_D_4733 simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012468959.1 | 0.0 | PREDICTED: transcription factor bHLH68-like isoform X1 | ||||
Swissprot | Q8S3D1 | 3e-89 | BH068_ARATH; Transcription factor bHLH68 | ||||
TrEMBL | A0A0D2LT02 | 0.0 | A0A0D2LT02_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G007000.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29100.1 | 7e-81 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G007000.2 |
Entrez Gene | 105787024 |
Publications ? help Back to Top | |||
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