PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G007000.1
Common NameB456_001G007000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 387aa    MW: 42289.3 Da    PI: 8.7808
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G007000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.000522282661255
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Gorai.001G007000.1 228 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 266
                         6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.49216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-10226276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.91E-6226270No hitNo description
Gene3DG3DSA:4.10.280.103.5E-7230272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MNQGVLQSSP VQQLMAGNPD WWSINNAMRP PSTHHHHHHQ QTASPFFPFP PPQPPPPPAA  60
AAAAATFFPQ LIPTSTSSSS SWHDNNNQEV PEPWSQLLLG GLVGEEQATA LQHQASTGNN  120
NIMKQENYVY GHANEDYHHH HHHHYQGSKA TTNWSMATAS SSPKSCVTTS FNNNMLDFSS  180
NIKVDTATRQ HPPLMDPSPE CNSSTASGGA LKKTRVQPSA TQSTFKVRKE KLGDRITALH  240
QLVSPFGKTD TASVLLEAIG YIRFLQSQIE ALSLPYLGSD GSSGNMRQQQ QSVQGERNCI  300
FPEDPGQLLN EKCMKKRKGG PADLQDSNEE PKKNLKSRGL CLVPISCTLQ VGSDNGADYW  360
APPSLGFLGK AIAKHTLKEK KKQQKK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5272611e-159HQ527261.1 Gossypium herbaceum clone NBRI_D_4733 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468959.10.0PREDICTED: transcription factor bHLH68-like isoform X1
SwissprotQ8S3D18e-89BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A0D2QIX60.0A0A0D2QIX6_GOSRA; Uncharacterized protein
STRINGGorai.001G007000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18722851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.13e-80bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]