PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G003200.1
Common NameB456_001G003200, LOC105771190
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family S1Fa-like
Protein Properties Length: 626aa    MW: 68094.8 Da    PI: 6.7176
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G003200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA22.13e-07232278752
                S1FA   7 eakGlnPGlivllvvgglllv.flvgnyilyvyaqknlPPrkkkPvs 52 
                          + Gl  G iv +vvg++l+  +++   il+   q+  P rk kPv+
  Gorai.001G003200.1 232 KSSGLSTGAIVAIVVGSVLVAlLFLLCLILFLCKQQRRPDRKEKPVT 278
                         578**************99641345579*****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.80.10.105.5E-4026207IPR032675Leucine-rich repeat domain, L domain-like
PfamPF082633.4E-82661IPR013210Leucine-rich repeat-containing N-terminal, plant-type
SuperFamilySSF520587.49E-3446207IPR032675Leucine-rich repeat domain, L domain-like
PfamPF046894.9E-5232279IPR006779DNA binding protein S1FA
PROSITE profilePS5001130.365327594IPR000719Protein kinase domain
PfamPF000693.6E-38330588IPR000719Protein kinase domain
SuperFamilySSF561129.72E-59331591IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.201.0E-14333402No hitNo description
CDDcd140661.67E-88333594No hitNo description
Gene3DG3DSA:1.10.510.102.0E-35403608No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MVLSFSSVIL VSVLILSYGV NSEPVQDKQA LLTFLSMVKH ENRVQWNSST SACDWVGVEC  60
DATRSFVFTL RLPGVGLVGS IPPKTIGLLN RLRVLSLRAN RLSGTVPADF SNLTLLRGLY  120
LQENQFTGSF PSSLTRLTRL VRLDLSSNNF TGPIPVGVNN LAHLTGLFLQ NNTFSGSLPA  180
INSDGLDDFD VSNNNLTGSI PYTLSKFPAS SFAGNIGLCG GPLRACNPTY RKSSGLSTGA  240
IVAIVVGSVL VALLFLLCLI LFLCKQQRRP DRKEKPVTEE TRAAPPAEAG TSSSKDDVTG  300
GSIEREKNKL VFFESGVYSF DLEDLLRASA EVLGKGSVGT SYKAVLEEGT AVVVKRLKDV  360
AASKREFEMQ MEKLGKIKHE KVVPLRAFYY SKDEKLLVYE FMPNGSLSAL LHGSRGSGHT  420
PLDWDNRIKI ALSTAKGLSY LHLSQVAHGN IKSSNILLGP NREACISDYG LNPLFGNTTP  480
PSRVTGYRAP EVLETRNVTF KSDVYSFGVL LLEVLTGKSP SQASLGEEGI DLPRWVQSVV  540
REEWTAEVFD AELMRYHNIE EEMVQLLQIA MTCVSVVPDQ RPAMVDVVRM IEDLNRAEID  600
DGLPQSSDAN TPPTESRTPP TSATP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4oh4_A4e-5331359525320Protein BRASSINOSTEROID INSENSITIVE 1
4oh4_B4e-5331359525320Protein BRASSINOSTEROID INSENSITIVE 1
4q5j_A5e-5331359525320Protein BRASSINOSTEROID INSENSITIVE 1
4q5j_B5e-5331359525320Protein BRASSINOSTEROID INSENSITIVE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5254101e-147HQ525410.1 Gossypium herbaceum clone NBRI_E2_2226 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448373.10.0PREDICTED: probable inactive receptor kinase At2g26730
SwissprotO487880.0Y2267_ARATH; Probable inactive receptor kinase At2g26730
TrEMBLA0A0D2N4310.0A0A0D2N431_GOSRA; Uncharacterized protein
STRINGGorai.001G003200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM445422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.32e-12WRKY family protein
Publications ? help Back to Top
  1. Honys D,Twell D
    Comparative analysis of the Arabidopsis pollen transcriptome.
    Plant Physiol., 2003. 132(2): p. 640-52
    [PMID:12805594]
  2. Diévart A,Clark SE
    Using mutant alleles to determine the structure and function of leucine-rich repeat receptor-like kinases.
    Curr. Opin. Plant Biol., 2003. 6(5): p. 507-16
    [PMID:12972053]
  3. Nühse TS,Stensballe A,Jensen ON,Peck SC
    Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.
    Plant Cell, 2004. 16(9): p. 2394-405
    [PMID:15308754]
  4. Niittylä T,Fuglsang AT,Palmgren MG,Frommer WB,Schulze WX
    Temporal analysis of sucrose-induced phosphorylation changes in plasma membrane proteins of Arabidopsis.
    Mol. Cell Proteomics, 2007. 6(10): p. 1711-26
    [PMID:17586839]
  5. Marmagne A, et al.
    A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome.
    Mol. Cell Proteomics, 2007. 6(11): p. 1980-96
    [PMID:17644812]
  6. Hazzouri KM,Mohajer A,Dejak SI,Otto SP,Wright SI
    Contrasting patterns of transposable-element insertion polymorphism and nucleotide diversity in autotetraploid and allotetraploid Arabidopsis species.
    Genetics, 2008. 179(1): p. 581-92
    [PMID:18493073]
  7. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]