PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G001500.3 | ||||||||
Common Name | B456_001G001500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 364aa MW: 40910.2 Da PI: 5.2232 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00024 | 39 | 63 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 y+C+ C+k ++++ + +H+++ H Gorai.001G001500.3 39 YSCGLCDKGYRSSKAYSQHLKSraH 63 99******************98666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.38E-6 | 38 | 75 | No hit | No description |
SMART | SM00355 | 0.45 | 39 | 63 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 4.8E-6 | 39 | 63 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 9.265 | 39 | 68 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 41 | 63 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.75E-6 | 123 | 197 | No hit | No description |
Pfam | PF12756 | 2.3E-25 | 138 | 239 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 25 | 187 | 214 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MVKLNQVAGV PGVTEALFLA RQAALAEEKD KQNETPMLYS CGLCDKGYRS SKAYSQHLKS 60 RAHIAQASQH PEEEKAAIIK PFIRRAVNKP PQPRDTNDEE SDDDWVEVDP DEDLASGDEM 120 DIDNGEETGQ EELDPCCCFM CDLKHDTIES CVVHMHKFHG FFIPDVEYLK NPEGLLIYLG 180 LKVKRDFICL YCNERCHPFT SLEAVRKHMA AKGHCKVHYG DGDEDEEAEL EEFYDYSSSY 240 VDDWGKQLVA VGDKDSTVEL GGGSELIITR KSDEGIMSKT LGSREYSRYY RQSPRPSPAN 300 NMAITAALAS RYRSMGLATV QSKEQIVRMK VMKAMNRSGV ETMRTKVGMK NNVIQNLPKN 360 VPY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5apo_y | 7e-19 | 138 | 339 | 164 | 378 | CYTOPLASMIC 60S SUBUNIT BIOGENESIS FACTOR REI1 |
6rzz_u | 6e-19 | 138 | 339 | 164 | 378 | Cytoplasmic 60S subunit biogenesis factor REI1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Pre-60S-associated factor involved in the cytoplasmic maturation of the 60S subunit. Involved in the dissociation and recycling of other late pre-60S factors before newly synthesized large ribosomal subunits enter translation (By similarity). Can complement the growth defect of a yeast mutant lacking REI1 (PubMed:24038679). Required for leaf growth under cold temperature conditions (PubMed:24038679). {ECO:0000250|UniProtKB:P38344, ECO:0000269|PubMed:24038679}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012477804.1 | 0.0 | PREDICTED: zinc finger protein 622-like | ||||
Swissprot | Q8H1G5 | 1e-158 | REIL1_ARATH; Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1 | ||||
TrEMBL | A0A0D2LRF7 | 0.0 | A0A0D2LRF7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G001500.1 | 0.0 | (Gossypium raimondii) |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G001500.3 |
Publications ? help Back to Top | |||
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