PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.U039200.2.p
Common NameGLYMA_U039200, LOC100800822
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 292aa    MW: 33625.9 Da    PI: 6.7999
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.U039200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.21.6e-092182532055
                        HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                        +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Glyma.U039200.2.p 218 YKWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 253
                        5679*****************************885 PP
2ELK38.32.8e-13173194122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELK++LlrKYsgyL+sLkqE+s
  Glyma.U039200.2.p 173 ELKNHLLRKYSGYLSSLKQELS 194
                        9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.5E-193074IPR005540KNOX1
PfamPF037902.4E-203173IPR005540KNOX1
SMARTSM012564.3E-3081132IPR005541KNOX2
PfamPF037918.5E-2585131IPR005541KNOX2
SMARTSM011883.5E-7173194IPR005539ELK domain
PfamPF037891.9E-10173194IPR005539ELK domain
PROSITE profilePS5121311.296173193IPR005539ELK domain
PROSITE profilePS5007112.989193256IPR001356Homeobox domain
SuperFamilySSF466898.13E-20194269IPR009057Homeodomain-like
SMARTSM003892.1E-13195260IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-27198259IPR009057Homeodomain-like
CDDcd000863.35E-12205257No hitNo description
PfamPF059207.5E-17213252IPR008422Homeobox KN domain
PROSITE patternPS000270231254IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MRGNLHNTMH HHHPQQQQGG SPTSSTGEVE AIKAKIIAHP QYSNLLEAYM DCQKIGATPE  60
VVARMVAAKQ EFEARQRSSV GSRETSKDPE LDQFMEAYYD MLVKYREELT RPIQEAMDFM  120
RRIETQLNML CNGPVRILSD DKCEGAGSSE EDQDNSGGET ELPEIDPRAE DRELKNHLLR  180
KYSGYLSSLK QELSKKKKKG KLPKDARQKL LNWWELHYKW PYPSESEKVA LAESTGLDQK  240
QINNWFINQR KRHWKPSEDM QFMVMDGLHP QSATLYMDGH YMADGHYRLG P*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.212150.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed only in the stems.
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.U039200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1070020.0HM107002.1 Glycine max KNOX-like DNA-binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556963.20.0homeotic protein knotted-1
RefseqXP_028209109.10.0homeotic protein knotted-1-like
SwissprotO041351e-169KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A445GAX40.0A0A445GAX4_GLYSO; Homeobox protein knotted-1-like 2
TrEMBLI1J4040.0I1J404_SOYBN; Uncharacterized protein
TrEMBLK7K0T90.0K7K0T9_SOYBN; Uncharacterized protein
STRINGGLYMA0041S00360.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-143KNOTTED-like from Arabidopsis thaliana