PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.U039200.1.p
Common NameGLYMA_U039200, LOC100800822
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 388aa    MW: 44458.4 Da    PI: 6.9336
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.U039200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.3e-093143492055
                        HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                        +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Glyma.U039200.1.p 314 YKWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 349
                        5679*****************************885 PP
2ELK37.84e-13269290122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELK++LlrKYsgyL+sLkqE+s
  Glyma.U039200.1.p 269 ELKNHLLRKYSGYLSSLKQELS 290
                        9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.5E-19126170IPR005540KNOX1
PfamPF037903.6E-20127169IPR005540KNOX1
SMARTSM012564.3E-30177228IPR005541KNOX2
PfamPF037911.3E-24181227IPR005541KNOX2
PfamPF037892.7E-10269290IPR005539ELK domain
PROSITE profilePS5121311.296269289IPR005539ELK domain
SMARTSM011883.5E-7269290IPR005539ELK domain
PROSITE profilePS5007112.989289352IPR001356Homeobox domain
SuperFamilySSF466891.33E-19290365IPR009057Homeodomain-like
SMARTSM003892.1E-13291356IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.5E-27294355IPR009057Homeodomain-like
CDDcd000862.50E-12301353No hitNo description
PfamPF059201.1E-16309348IPR008422Homeobox KN domain
PROSITE patternPS000270327350IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MEEYTNNNHL SENTGPSPST PRPNFLYSSA SGGNHNHNHH QHHSHHHHHQ FPINTFHLQS  60
GGSDHCFQSD QVSPHHSVKS EASTSQLHAP IFHYPLMRGN LHNTMHHHHP QQQQGGSPTS  120
STGEVEAIKA KIIAHPQYSN LLEAYMDCQK IGATPEVVAR MVAAKQEFEA RQRSSVGSRE  180
TSKDPELDQF MEAYYDMLVK YREELTRPIQ EAMDFMRRIE TQLNMLCNGP VRILSDDKCE  240
GAGSSEEDQD NSGGETELPE IDPRAEDREL KNHLLRKYSG YLSSLKQELS KKKKKGKLPK  300
DARQKLLNWW ELHYKWPYPS ESEKVALAES TGLDQKQINN WFINQRKRHW KPSEDMQFMV  360
MDGLHPQSAT LYMDGHYMAD GHYRLGP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.212150.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed only in the stems.
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.U039200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1070020.0HM107002.1 Glycine max KNOX-like DNA-binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556963.20.0homeotic protein knotted-1
RefseqXP_028209109.10.0homeotic protein knotted-1-like
SwissprotO041351e-175KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A445GAX40.0A0A445GAX4_GLYSO; Homeobox protein knotted-1-like 2
TrEMBLK7K0T90.0K7K0T9_SOYBN; Uncharacterized protein
STRINGGLYMA0041S00360.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45843246
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-148KNOTTED-like from Arabidopsis thaliana