PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 353aa MW: 37845.2 Da PI: 6.2911

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.U027500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.5	5.7e-17	35	80	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v ++G ++W++Iar + gR++k+c++rw + Glyma.U027500.1.p 35 KGPWSPEEDVILSRLVSKFGARNWSLIARGIS-GRSGKSCRLRWCNQ 80 79****************************.*********985 PP
2	Myb_DNA-binding	58.3	1.7e-18	87	131	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd+ +v a++ +G++ W++Iar ++ gRt++ +k++w++ Glyma.U027500.1.p 87 RKPFTDEEDQMIVAAHAIHGNK-WAAIARLLP-GRTDNAIKNHWNST 131 789*****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.863	30	81	IPR017930	Myb domain
SuperFamily	SSF46689	1.01E-30	32	128	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-14	34	83	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-25	36	88	IPR009057	Homeodomain-like
CDD	cd00167	5.01E-14	37	79	No hit	No description
Pfam	PF13921	3.4E-16	38	97	No hit	No description
PROSITE profile	PS51294	25.824	82	136	IPR017930	Myb domain
SMART	SM00717	2.4E-17	86	134	IPR001005	SANT/Myb domain
CDD	cd00167	2.94E-13	89	132	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.9E-24	89	135	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MEPEETAAAA ADGSGDEGLL GLDSGSGGGG RDRVKGPWSP EEDVILSRLV SKFGARNWSL 60 IARGISGRSG KSCRLRWCNQ LDPAVKRKPF TDEEDQMIVA AHAIHGNKWA AIARLLPGRT 120 DNAIKNHWNS TLRRRGVGHD TIKLESGSFM EDVSLEKAKA SSEDTLSCGD VSLKSSEGRD 180 VSSMEIMDDK SDGKAQTEGQ LHHEVKDPPT LFRPVARVSA FNVYHSFDGT QPSTSIPRSV 240 SMQGPVLQSS KPDMEFYRAL EGIFGDQSVP HQCGHGCCAA PNGRKSESSL LGPEFIEFSE 300 PPSFPNFELA AIATDISNLA WLKSGLESSS VKIMGNTSGR VVSNGSQVHI GH*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MEPEETAAAA ADGSGDEGLL GLDSGSGGGG RDRVKGPWSP EEDVILSRLV SKFGARNWSL  60
IARGISGRSG KSCRLRWCNQ LDPAVKRKPF TDEEDQMIVA AHAIHGNKWA AIARLLPGRT  120
DNAIKNHWNS TLRRRGVGHD TIKLESGSFM EDVSLEKAKA SSEDTLSCGD VSLKSSEGRD  180
VSSMEIMDDK SDGKAQTEGQ LHHEVKDPPT LFRPVARVSA FNVYHSFDGT QPSTSIPRSV  240
SMQGPVLQSS KPDMEFYRAL EGIFGDQSVP HQCGHGCCAA PNGRKSESSL LGPEFIEFSE  300
PPSFPNFELA AIATDISNLA WLKSGLESSS VKIMGNTSGR VVSNGSQVHI GH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-40	32	135	4	107	B-MYB
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.29873	0.0	somatic embryo

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00337	DAP	Transfer from AT3G09230	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.U027500.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid. {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	0.0	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003520943.1	0.0	transcription factor MYB1
Refseq	XP_028224708.1	0.0	transcription factor MYB1-like
Swissprot	Q42575	1e-111	MYB1_ARATH; Transcription factor MYB1
TrEMBL	A0A445L9I8	0.0	A0A445L9I8_GLYSO; Transcription factor MYB1
TrEMBL	I1JLW1	0.0	I1JLW1_SOYBN; Uncharacterized protein
STRING	GLYMA03G15810.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3986	33	62
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	1e-112	myb domain protein 1

Link Out ? help Back to Top
Phytozome	Glyma.U027500.1.p
Entrez Gene	100813406

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590] Verma N,Burma PK Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum. Plant J., 2017. 92(3): p. 481-494 [PMID:28849604]