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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.U024500.1.p | ||||||||
Common Name | GLYMA_U024500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 141aa MW: 16014.7 Da PI: 10.4173 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44.6 | 1.8e-14 | 11 | 44 | 3 | 36 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaeva 36 i n+++r +tf kR++ ++KKAeEL +LC++e++ Glyma.U024500.1.p 11 IANNTKRITTFRKRKKSLMKKAEELNTLCGIEAC 44 89******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.6E-13 | 1 | 55 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 15.881 | 1 | 42 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.40E-21 | 2 | 80 | No hit | No description |
SuperFamily | SSF55455 | 1.83E-18 | 2 | 89 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.2E-13 | 11 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MGRKKVKLAL IANNTKRITT FRKRKKSLMK KAEELNTLCG IEACRDKPEP EVWPSELGVL 60 SVVERFRSRP ELDQSRKKVN QESFVSQSIV KGQDRLQKVV KENKEIEMSS FMTQCLNIGN 120 VQPCKNMTTA DLNVLSSMIE * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKLALIANNTKRITTFRKRK |
2 | 21 | 25 | RKRKK |
3 | 64 | 77 | RFRSRPELDQSRKK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.U024500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235739 | 0.0 | AC235739.1 Glycine max strain Williams 82 clone GM_WBb0002K19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028186497.1 | 7e-72 | agamous-like MADS-box protein AGL80 | ||||
Swissprot | Q9FJK3 | 2e-31 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A445I4H9 | 7e-97 | A0A445I4H9_GLYSO; Agamous-like MADS-box protein AGL80 | ||||
STRING | GLYMA11G30500.2 | 1e-97 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF452 | 33 | 154 | Representative plant | OGRP114 | 13 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-30 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.U024500.1.p |
Publications ? help Back to Top | |||
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