PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.U021300.2.p | ||||||||
Common Name | GLYMA_U021300, LOC778106 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | Dof | ||||||||
Protein Properties | Length: 311aa MW: 34162 Da PI: 7.7147 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 128.9 | 1.4e-40 | 35 | 96 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+alkcprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss Glyma.U021300.2.p 35 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 96 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-28 | 23 | 88 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.7E-34 | 37 | 93 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.646 | 39 | 93 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 41 | 77 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MDPSSGQHQQ MSSQSLENML ACSKAHQERK PTPQPEQALK CPRCDSTNTK FCYYNNYSLS 60 QPRYFCKSCR RYWTKGGTLR NVPVGGGCRK NKRSSSSSST SKRVQDQAFT PNVNPLTGLP 120 SLMSYDSNDL TLALARLQKQ SCGQLGYDDH DLSMLGNHHT NTPCGDNILG MHHHSSSSST 180 NPGFLDALRS GFLGTQSNNN MHQNMYYGYG NGDMGEVDNG GGVGVSSSGE MMMMMMPYNN 240 DQEMSIASTQ AVTVTTMKQE ICNGREQKVL WGFPWQLNGD TNMGELDSGR ASNWNGINSS 300 WHGLLNSPLM * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.28633 | 0.0 | meristem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.U021300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ857263 | 0.0 | DQ857263.1 Glycine max Dof13 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003538037.1 | 0.0 | dof zinc finger protein DOF2.1 | ||||
TrEMBL | A0A445I1Q6 | 0.0 | A0A445I1Q6_GLYSO; Dof zinc finger protein DOF2.1 isoform A | ||||
STRING | GLYMA11G15761.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28510.1 | 1e-43 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.U021300.2.p |
Entrez Gene | 778106 |