PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

SBP

Protein Properties

Length: 224aa MW: 24503.4 Da PI: 9.7009

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.U015800.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131	4.1e-41	56	133	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l +ak+yhrrhkvCe+hskap+v+v g+eqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++ Glyma.U015800.2.p 56 RCQVEGCHVALLNAKDYHRRHKVCEMHSKAPKVVVLGMEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSH 133 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.3E-35	52	118	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.342	54	131	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	5.89E-39	55	136	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.2E-32	57	130	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
LGKRHYFEDT SGSGSVVGAA TFGGGLVYGD KRGKGYSSGG GAGVKAAGFA AATVPRCQVE 60 GCHVALLNAK DYHRRHKVCE MHSKAPKVVV LGMEQRFCQQ CSRFHVVSEF DDSKRSCRRR 120 LAGHNERRRK SSHDSVARNS SQGGCALSLL SSRSDSWLSP SDLSTRCSAA LRELIAENRA 180 AIMARQFVSD RSHLHSHHHA VEDLKDIQPE SNYFPQQMYP QTQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-30	57	130	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269\|PubMed:16861571}.
Uniprot	TISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269\|PubMed:16861571}.

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.U015800.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	1e-69	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025983401.1	1e-139	squamosa promoter-binding-like protein 7
Swissprot	Q01JD1	2e-55	SPL7_ORYSI; Squamosa promoter-binding-like protein 7
Swissprot	Q7XT42	2e-55	SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBL	A0A445M028	1e-132	A0A445M028_GLYSO; Squamosa promoter-binding-like protein 7
TrEMBL	K7K2H7	1e-132	K7K2H7_SOYBN; Uncharacterized protein
STRING	GLYMA11G16556.1	1e-164	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	9e-37	squamosa promoter binding protein-like 9

Link Out ? help Back to Top
Phytozome	Glyma.U015800.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]