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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.U015500.1.p | ||||||||
Common Name | GLYMA_U015500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 166aa MW: 19585 Da PI: 9.9229 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.7 | 0.0005 | 17 | 56 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + e+ErrRR+++ +++ Lr+l+ k a+i+e A+ YI q Glyma.U015500.1.p 17 NLEVERRRREKLSTRLLMLRSLMNK-----------ATIVEDAITYIETQQ 56 6699****************99755...........589999999997665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.49E-10 | 14 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.27E-7 | 14 | 60 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.5E-6 | 14 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.2E-5 | 18 | 61 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MRKKNYECDT QVFKSKNLEV ERRRREKLST RLLMLRSLMN KATIVEDAIT YIETQQNIVQ 60 SLSYELHEME ATSEEIKPKK EEIDEEVQAT KIDGNKLWVK MIIEKKRGRF KKLMEAMHNI 120 GIELIDTNVT TLKKSYMVTT FMQLFFKAWM VNGKQKVVMD IVWGN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 20 | 25 | ERRRRE |
2 | 21 | 26 | RRRREK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First observed in floral meristem and early anther primordia. Later detected in archesporial cells. From stage 4 to early stage 5, weakly expressed in precursors of the middle layer, tapetum and meiocytes. Strongly expressed in the tapetum from late anther stage 5 to early stage 6, and at a lower level in meiocytes. {ECO:0000269|PubMed:16831835}. | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in anthers, and, to a lower extent, in young inflorescences undergoing meiosis and siliques. {ECO:0000269|PubMed:16831835}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Involved in the control of tapetum development. Required for male fertility and pollen differentiation, especially during callose deposition. {ECO:0000269|PubMed:16831835}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.U015500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC185959 | 2e-49 | AC185959.13 Glycine max cultivar Williams 82 clone gmw1-58k3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027348379.1 | 1e-66 | transcription factor DYT1-like | ||||
Swissprot | O81900 | 6e-29 | DYT1_ARATH; Transcription factor DYT1 | ||||
TrEMBL | A0A445I211 | 1e-116 | A0A445I211_GLYSO; Transcription factor DYT1 | ||||
STRING | XP_007148286.1 | 2e-58 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5510 | 29 | 48 | Representative plant | OGRP10309 | 4 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21330.1 | 7e-20 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.U015500.1.p |