PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.U013800.1.p
Common NameGLYMA_U013800, LOC100805945
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 746aa    MW: 81780.8 Da    PI: 6.2712
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.U013800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS312.59.5e-963897442374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        +e+L+++Ae +++g+lela+ +Larl+++ sp g+p+qR+a+yf+eAL+  l++  +      ++ + s++    ++ a+k fse+sP+l+f
  Glyma.U013800.1.p 389 TEQLFKAAELIDAGNLELAHGILARLNHQLSPIGKPFQRAAFYFKEALQLLLHS--NANN---SSFTFSPTGLLLKIGAYKSFSEISPVLQF 475
                        689**************************************************9..3333...44444444599****************** PP

               GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                        +++t+Nqa+leav+g +r+HiiDfdi+ G+QW +++q+La R++g+p+l+iT+++sp+++++ el+ t+e L+++A el++pfe ++l  ++
  Glyma.U013800.1.p 476 ANFTCNQALLEAVKGFDRIHIIDFDIGLGGQWSSFMQELALRNGGAPELKITAFVSPSHHDEIELSFTQESLKQYAGELRMPFELEILSLES 567
                        ***************************************************************************************96666 PP

               GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklp 276
                        l++   +   ++   a++Vn+ +  ++ +      +s+ + vL++vk+l Pk+vv  ++ +d+++++F ++++ al+ ys l++sl ++++ 
  Glyma.U013800.1.p 568 LNSA-SWPQPLRDCKAVVVNMPIGSFSNY------PSYLPLVLRFVKQLMPKIVVTLDRSCDRTDAPFPQHLIFALQSYSGLLESLdAVNV- 651
                        6655.344457889999999999887776......677788*********************************************55554. PP

               GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
                         + +  +++E+ +l+++ +++v  ++      +e++  W++ l ++GF+p+++s+++++qa++l+++++s+g++ve+++ slvl+W+++ L+
  Glyma.U013800.1.p 652 -HPDVLQMIEKYYLQPSMEKLVLGRHGL----QERALPWKNLLLSSGFSPLTFSNFTESQAECLVQRTPSKGFHVEKRQSSLVLCWQRKDLI 738
                        .5578899**************998887....88899******************************************************* PP

               GRAS 369 svSaWr 374
                        svS Wr
  Glyma.U013800.1.p 739 SVSTWR 744
                        *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.047362724IPR005202Transcription factor GRAS
PfamPF035143.3E-93389744IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MNEMKAVPLP YQEFRGNGVL DFASGAAAAV SDSLLLPQQE QFLQRWNPQR ENFCYVGIEP  60
SSGLDRKRKT SSPPTSSSTL SSSRASSGST DSTTGTATAT AAEKENNPPQ AGLEVGQARC  120
GLGMEDWESV LSESPGQDHS ILKLIMGDIE DPSVGLTKLL QGGSGSQDVE FNGVGVGFGL  180
VDQSSVLFPI PSVNFVSSSS SIDPSGTGNC SDFPFNSQTN VSPNVPRVGS GVNPNTTGFP  240
ASASNLSPVS LPQGVFLPQQ QQQHHPPIEP LDEKLQVLNP QFILNQNQSQ FMPNAGLVLP  300
LTYGQLQENH QLLPQPPAKR LNCGPNYQVP KTPFLDSGQE LLLRRQQQQL QLLPHHLLQR  360
PSMVVAPKQK MVNSGGQDLA THQLQQAITE QLFKAAELID AGNLELAHGI LARLNHQLSP  420
IGKPFQRAAF YFKEALQLLL HSNANNSSFT FSPTGLLLKI GAYKSFSEIS PVLQFANFTC  480
NQALLEAVKG FDRIHIIDFD IGLGGQWSSF MQELALRNGG APELKITAFV SPSHHDEIEL  540
SFTQESLKQY AGELRMPFEL EILSLESLNS ASWPQPLRDC KAVVVNMPIG SFSNYPSYLP  600
LVLRFVKQLM PKIVVTLDRS CDRTDAPFPQ HLIFALQSYS GLLESLDAVN VHPDVLQMIE  660
KYYLQPSMEK LVLGRHGLQE RALPWKNLLL SSGFSPLTFS NFTESQAECL VQRTPSKGFH  720
VEKRQSSLVL CWQRKDLISV STWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-3039474325378Protein SCARECROW
5b3h_A7e-3039474324377Protein SCARECROW
5b3h_D7e-3039474324377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.210470.0cotyledon| leaf| pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.U013800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014628593.10.0scarecrow-like protein 6
RefseqXP_028189427.10.0scarecrow-like protein 6
TrEMBLA0A445I2490.0A0A445I249_GLYSO; Scarecrow-like protein 6 isoform A
STRINGGLYMA11G17490.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Representative plantOGRP17501242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-134GRAS family protein