PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G247300.1.p
Common NameGLYMA_20G247300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family RAV
Protein Properties Length: 320aa    MW: 36201.6 Da    PI: 8.1061
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G247300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.12.6e-093682254
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                         ++kGV    ++g W A+I+       ++r++lg+f ++ eAa a++ a  kl+
  Glyma.20G247300.1.p 36 KFKGVV-SQQNGNWGAQIYAH-----QQRIWLGTFKSEREAAMAYDSASIKLR 82
                         799**6.5558*********5.....6**********99*********99997 PP
2B382.54e-26157247183
                          EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                          f+k+ltpsdv+k++rlv+pkk+a ++           g     +++ +++d+  r W+++++y+k+s++yv+t+GW++Fvk+++Lk++D+
  Glyma.20G247300.1.p 157 FQKELTPSDVGKLNRLVIPKKHAVSYfpyvggsadesG---SVDVEAVFYDKLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDV 243
                          99****************************98765422...2467899****************************************** PP

                          EEEE CS
                   B3  80 vvFk 83 
                          + F 
  Glyma.20G247300.1.p 244 IAFF 247
                          *996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.33E-193593No hitNo description
SuperFamilySSF541718.5E-143693IPR016177DNA-binding domain
PfamPF008471.2E-43682IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-163691IPR001471AP2/ERF domain
PROSITE profilePS5103216.2393691IPR001471AP2/ERF domain
SMARTSM003801.3E-153697IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.105.3E-30154252IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.05E-27155252IPR015300DNA-binding pseudobarrel domain
CDDcd100173.56E-25156255No hitNo description
PROSITE profilePS5086311.942157268IPR003340B3 DNA binding domain
PfamPF023621.8E-23157247IPR003340B3 DNA binding domain
SMARTSM010192.2E-17157257IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MIQTYKESSD CSEIKFAFDA VVKRARHEEN NAAAQKFKGV VSQQNGNWGA QIYAHQQRIW  60
LGTFKSEREA AMAYDSASIK LRSGECHRNF PWNDQTVQEP QFQSHYSAET VLNMIRDGTY  120
PSKFATFLKT RQTQKGVAKH IGLKGDDEEQ FCCTQLFQKE LTPSDVGKLN RLVIPKKHAV  180
SYFPYVGGSA DESGSVDVEA VFYDKLMRLW KFRYCYWKSS QSYVFTRGWN RFVKDKKLKA  240
KDVIAFFTWG KSGGEGEAFA LIDVIYNNNA EEDSKGDTKQ VLGNQLQLAG SEEGEDEDAN  300
IGKDFNAQKG LRLFGVCIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A7e-2815624613100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G247300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025983219.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680
SwissprotQ9C6P52e-96RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A0R0ESD60.0A0A0R0ESD6_SOYBN; Uncharacterized protein
STRINGGLYMA20G39140.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Representative plantOGRP10227710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.17e-99RAV family protein