PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G246400.2.p
Common NameGLYMA_20G246400, LOC100816123
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 333aa    MW: 37141.8 Da    PI: 8.977
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G246400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.77e-104587345
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                         + k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Glyma.20G246400.2.p 45 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 87
                         568899************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.9E-83790No hitNo description
SMARTSM003382.2E-643106IPR004827Basic-leucine zipper domain
PfamPF077164.1E-74389IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4154589IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.19E-74790No hitNo description
PROSITE patternPS0003605065IPR004827Basic-leucine zipper domain
PfamPF141443.4E-33129204IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MADASPRTDI STDVDTDDKN PRFDRSQSLV AVVSDSSDRS KDKSDQKTLR RLAQNREAAR  60
KSRLRKKAYV QQLESSRLKL TQLEQELQRA RQQGIIISNS GDQAHSMSGN GAMAFDVEYA  120
RWLEEQNRQV NELRAAVNSH AGDTELRMII DGIMAHYDEI FRLKADAAKA DVFHLLSGMW  180
KTPAERCFLW LGGFRSSELL KLLVNQLEPL TEQQLVGITN LQQSSQQAED ALSQGMEALQ  240
QSLSETLSTG SLGSSGSSGN VANYMGQMAM AMGKLGTLEG FIKQADNLRQ QTLQQIHRIL  300
TTRQSARALL AIHDYFSRLR ALSSLWLARP RD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G246400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0933150.0BT093315.1 Soybean clone JCVI-FLGm-24E7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001242879.20.0bZIP transcription factor family protein
RefseqXP_006605392.10.0bZIP transcription factor family protein isoform X2
RefseqXP_006605393.10.0bZIP transcription factor family protein isoform X2
RefseqXP_006605394.10.0bZIP transcription factor family protein isoform X3
RefseqXP_014627739.10.0bZIP transcription factor family protein isoform X1
RefseqXP_014627740.10.0bZIP transcription factor family protein isoform X1
RefseqXP_014627741.10.0bZIP transcription factor family protein isoform X2
RefseqXP_014627742.10.0bZIP transcription factor family protein isoform X3
RefseqXP_014627743.10.0bZIP transcription factor family protein isoform X3
RefseqXP_014627744.10.0bZIP transcription factor family protein isoform X3
RefseqXP_028222401.10.0transcription factor TGA2-like isoform X1
RefseqXP_028222402.10.0transcription factor TGA2-like isoform X1
RefseqXP_028222403.10.0transcription factor TGA2-like isoform X2
RefseqXP_028222404.10.0transcription factor TGA2-like isoform X3
RefseqXP_028222405.10.0transcription factor TGA2-like isoform X3
RefseqXP_028222406.10.0transcription factor TGA2-like isoform X3
RefseqXP_028222407.10.0transcription factor TGA2-like isoform X3
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A0B2R4J00.0A0A0B2R4J0_GLYSO; Transcription factor HBP-1b(C1)
TrEMBLA0A0R4J6800.0A0A0R4J680_SOYBN; Uncharacterized protein
TrEMBLI1NJB90.0I1NJB9_SOYBN; Uncharacterized protein
TrEMBLK7N5H30.0K7N5H3_SOYBN; Uncharacterized protein
STRINGGLYMA20G39050.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-149TGACG motif-binding factor 6