PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G246400.1.p
Common NameGLYMA_20G246400, LOC100816123
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 445aa    MW: 49505.4 Da    PI: 6.1981
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G246400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.11e-09157199345
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                          + k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Glyma.20G246400.1.p 157 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 199
                          568899************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.0E-8151202No hitNo description
PfamPF077166.3E-7155201IPR004827Basic-leucine zipper domain
SMARTSM003382.2E-6155218IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415157201IPR004827Basic-leucine zipper domain
CDDcd147087.06E-21159210No hitNo description
SuperFamilySSF579599.14E-7159202No hitNo description
PROSITE patternPS000360162177IPR004827Basic-leucine zipper domain
PfamPF141445.4E-33241316IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MPSFDSQLPN SNACYTEGSA IDSFCVFDFD QSVGYRIEDC VALRGNSVFD SLKVSSQTIS  60
RGPVEVDSFD KLPTSLNKNP LTSQTERQRL QLQKVQLSNL VSGDTEHQEE SAMADASPRT  120
DISTDVDTDD KNPRFDRSQS LVAVVSDSSD RSKDKSDQKT LRRLAQNREA ARKSRLRKKA  180
YVQQLESSRL KLTQLEQELQ RARQQGIIIS NSGDQAHSMS GNGAMAFDVE YARWLEEQNR  240
QVNELRAAVN SHAGDTELRM IIDGIMAHYD EIFRLKADAA KADVFHLLSG MWKTPAERCF  300
LWLGGFRSSE LLKLLVNQLE PLTEQQLVGI TNLQQSSQQA EDALSQGMEA LQQSLSETLS  360
TGSLGSSGSS GNVANYMGQM AMAMGKLGTL EGFIKQADNL RQQTLQQIHR ILTTRQSARA  420
LLAIHDYFSR LRALSSLWLA RPRD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G246400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0933150.0BT093315.1 Soybean clone JCVI-FLGm-24E7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001242879.20.0bZIP transcription factor family protein
RefseqXP_014627739.10.0bZIP transcription factor family protein isoform X1
RefseqXP_014627740.10.0bZIP transcription factor family protein isoform X1
RefseqXP_028222401.10.0transcription factor TGA2-like isoform X1
RefseqXP_028222402.10.0transcription factor TGA2-like isoform X1
SwissprotQ6IVC20.0TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBLA0A0B2R4J00.0A0A0B2R4J0_GLYSO; Transcription factor HBP-1b(C1)
TrEMBLI1NJB90.0I1NJB9_SOYBN; Uncharacterized protein
STRINGGLYMA20G39050.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14703494
Representative plantOGRP7221667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-148TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]