PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 194aa MW: 21784.5 Da PI: 8.262

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.20G215700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.9	1.2e-18	80	131	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++GVr+++ g+W AeIrdps++g r +lg++ taeeAa +++a+ kl+g+ Glyma.20G215700.1.p 80 KFRGVRQRP-LGKWSAEIRDPSQRG--VRLWLGTYNTAEEAALVYDNAAIKLRGP 131 89*****.8******9876..***********************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038123	3.6E-34	4	189	IPR017392	AP2/ERF transcription factor ERF/PTI6
CDD	cd00018	2.01E-29	79	137	No hit	No description
SMART	SM00380	2.8E-34	80	144	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.6E-28	80	137	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.352	80	138	IPR001471	AP2/ERF domain
Pfam	PF00847	1.3E-11	80	130	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.34E-21	80	138	IPR016177	DNA-binding domain
PRINTS	PR00367	2.4E-8	81	92	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.4E-8	104	120	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MAAPPTKYTH HTKLLIPPGP EEDPPKHPYP KLLRITVTDT DATDSSSDEE QTNFSTRHRH 60 RKLINEISIA RASDTRRGQK FRGVRQRPLG KWSAEIRDPS QRGVRLWLGT YNTAEEAALV 120 YDNAAIKLRG PHALTNFITP LLNEDTHNKF LFSPTSVLHV SENKVKVRGC SPVPDSVLFC 180 DDDWSSEFLT ASE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-22	77	137	2	62	ATERF1
3gcc_A	2e-22	77	137	2	62	ATERF1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.36388	0.0	hypocotyl\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:16832061}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.20G215700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT090065	0.0	BT090065.1 Soybean clone JCVI-FLGm-3F1 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028220833.1	1e-142	ethylene-responsive transcription factor ERF069-like
Swissprot	Q9SUE3	2e-35	CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBL	A0A445F8J9	1e-141	A0A445F8J9_GLYSO; Ethylene-responsive transcription factor CRF4
TrEMBL	I1NIF5	1e-141	I1NIF5_SOYBN; Uncharacterized protein
STRING	GLYMA20G35820.1	1e-142	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF450	34	161
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23750.2	1e-30	cytokinin response factor 2

Link Out ? help Back to Top
Phytozome	Glyma.20G215700.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zwack PJ,Compton MA,Adams CI,Rashotte AM Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance. Plant Cell Rep., 2016. 35(3): p. 573-84 [PMID:26650835] Raines T, et al. The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis. Plant J., 2016. 85(1): p. 134-47 [PMID:26662515]