PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 135aa MW: 15211 Da PI: 9.3575

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.20G203600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	69.3	7e-22	17	68	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdps++g r +lg+f+taeeAa+a+++a+ +l+g+ Glyma.20G203600.1.p 17 RYRGVRRRP-WGKYAAEIRDPSKQG--SRLWLGTFDTAEEAARAYDRAAFNLRGH 68 6******.******98865..************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.1E-32	17	76	IPR001471	AP2/ERF domain
Pfam	PF00847	1.2E-15	17	68	IPR001471	AP2/ERF domain
SMART	SM00380	1.6E-38	17	81	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	25.014	17	75	IPR001471	AP2/ERF domain
CDD	cd00018	3.78E-31	17	75	No hit	No description
SuperFamily	SSF54171	2.94E-24	17	76	IPR016177	DNA-binding domain
PRINTS	PR00367	5.9E-12	18	29	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.9E-12	41	57	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MEEHQKAGKL QGKEEVRYRG VRRRPWGKYA AEIRDPSKQG SRLWLGTFDT AEEAARAYDR 60 AAFNLRGHLA ILNFPSEYYS QIRGSPPYPP HLATPSSSSG AQQRPVFEIP CLDDKVLEDL 120 LGQSEEHKKK NKGD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-32	6	116	3	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.20G203600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	1e-37	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003555512.1	3e-96	ethylene-responsive transcription factor ERF098
Swissprot	Q9LTC5	6e-46	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	I1NI28	7e-95	I1NI28_SOYBN; Uncharacterized protein
STRING	GLYMA20G34560.1	1e-95	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF270	33	215
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	1e-38	ERF family protein

Link Out ? help Back to Top
Phytozome	Glyma.20G203600.1.p
Entrez Gene	100776376

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]