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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.20G199300.1.p | ||||||||
Common Name | GLYMA_20G199300, LOC100782089 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 29555.1 Da PI: 8.471 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.5 | 9.7e-16 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd ll+ +vk +G g+W++ ar g++R +k+c++rw +yl Glyma.20G199300.1.p 17 KGPWTSEEDRLLILYVKFHGEGRWNSAARLAGLKRNGKSCRLRWVNYL 64 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.8 | 7.7e-16 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g T++E+ ++ ++++++G++ W+tIar ++ gRt++++k++w+++ Glyma.20G199300.1.p 70 KGQITPQEESIIQELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 114 5778******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.771 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.62E-29 | 14 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-12 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-14 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-22 | 18 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.15E-9 | 19 | 64 | No hit | No description |
PROSITE profile | PS51294 | 23.465 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8E-14 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-13 | 70 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-25 | 71 | 120 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.91E-9 | 74 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MAGNMGWGVI EEEGWRKGPW TSEEDRLLIL YVKFHGEGRW NSAARLAGLK RNGKSCRLRW 60 VNYLRPDLKK GQITPQEESI IQELHARWGN RWSTIARSLP GRTDNEIKNY WRTHFKKKMK 120 TPSDAAEKAR IHSSRRQHFQ QQQQQLKQQQ QQFQFNLDMK GIINLLEEND HRVPSISQEA 180 QEMASMYPNT SEHQGYFYSM FNVNDNDNNV SAPESSNEEI LWDGLWNLDD VLCNFNAASA 240 TSKASLHNLV SPFC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-26 | 17 | 119 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.20G199300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235381 | 0.0 | AC235381.1 Glycine max strain Williams 82 clone GM_WBb0111G18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014628078.1 | 0.0 | myb-related protein 305 | ||||
Refseq | XP_028221407.1 | 0.0 | myb-related protein 305-like | ||||
TrEMBL | A0A445F7U6 | 0.0 | A0A445F7U6_GLYSO; Myb-related protein 305 | ||||
TrEMBL | I1NHY7 | 0.0 | I1NHY7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G34140.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1182 | 34 | 108 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 2e-81 | myb domain protein 305 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.20G199300.1.p |
Entrez Gene | 100782089 |