PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G197000.1.p
Common NameGLYMA_20G197000, LOC100820013
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 409aa    MW: 44668.2 Da    PI: 9.6195
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G197000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.38.9e-19243292356
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          +kGVr+++ +g+WvAeIr p++   r+r++lg+f++ae+Aa a++ a+  l+ge
  Glyma.20G197000.1.p 243 FKGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDSAEDAAIAYDTAAYILRGE 292
                          8******9.**********955...5************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.91E-30241301No hitNo description
SMARTSM003807.0E-33242305IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-21242300IPR016177DNA-binding domain
PROSITE profilePS5103221.838242299IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-30242300IPR001471AP2/ERF domain
PfamPF008472.9E-11243292IPR001471AP2/ERF domain
PRINTSPR003672.3E-9243254IPR001471AP2/ERF domain
PRINTSPR003672.3E-9265281IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MKDTFPKKEI FTQKTFPTCL QEMATGSKFL DNAIIRGSHS LTASNHVPVL RGGVNSSIAS  60
PHEKLLLCSN SVSMKEEAPL ATWISHIPAK FNGHEDIKNG KEKNQSNSIF PVSDIKNSSI  120
PLNLLETLPP LTIAPCFDDP VASLASSSAR PKFPNLTLFL PEPSMVYSSI SSSNIKGGEV  180
MSATSDPSYH VSQFGQNQHQ AGSGDAHKMN NNLTNSRSKS FNENWLSATR TQPLKYGGRG  240
KLFKGVRQRH WGKWVAEIRL PRNRTRVWLG TFDSAEDAAI AYDTAAYILR GEYAQLNFPD  300
LKHVIQANSL NGTTAALVEA KLQAISQGGS SHRKPTNSPP GSSNKHNDEN GKLKSISGKD  360
SSIRVGAEVT ERSKSKHHET SDVEGVQLSR MPSLDMDIIW DELFISNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-20238299163ATERF1
3gcc_A4e-20238299163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G197000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0985730.0BT098573.1 Soybean clone JCVI-FLGm-23A20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006606324.10.0ethylene-responsive transcription factor ERF062
RefseqXP_028220061.10.0ethylene-responsive transcription factor ERF062-like
TrEMBLI1NHW30.0I1NHW3_SOYBN; Uncharacterized protein
STRINGGLYMA20G33890.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101023141
Representative plantOGRP1128257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.12e-54ERF family protein