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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.20G192500.2.p |
Common Name | GLYMA_20G192500 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
NAC |
Protein Properties |
Length: 395aa MW: 44352 Da PI: 8.3444 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.20G192500.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 171.8 | 2.1e-53 | 34 | 161 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88
l+pGfrFhPtdeelv +yLk+kv+gk++++ ++i+evdiy++ePwdL +++k++++ewyfFs dkky +g r nrat++gyWkatg+
Glyma.20G192500.2.p 34 LAPGFRFHPTDEELVIYYLKRKVSGKSFRF-DAISEVDIYRSEPWDLAdkSRLKTRDQEWYFFSALDKKYGNGGRMNRATSKGYWKATGN 122
579**************************9.99**************75348899999******************************** PP
NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
d++v + ++++vglkktLvf++grap+g++t+Wvmheyrl
Glyma.20G192500.2.p 123 DRPVRH-DQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRL 161
******.999****************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009555 | Biological Process | pollen development |
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem |
GO:0005730 | Cellular Component | nucleolus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 395 aa
Download sequence Send
to blast |
MGRETMCLST PPPTTATTTV NPVPPPPPAP PTSLAPGFRF HPTDEELVIY YLKRKVSGKS 60 FRFDAISEVD IYRSEPWDLA DKSRLKTRDQ EWYFFSALDK KYGNGGRMNR ATSKGYWKAT 120 GNDRPVRHDQ RTVGLKKTLV FHSGRAPDGK RTNWVMHEYR LVEEELERAG TGSCQPQDTQ 180 SFNKAPFDVN KLPIETQNLL AVCKRESMAE YPSPEKDDNN CKHMDDYPSP QTDNPKPFSQ 240 IYKRRRHNLN SNNSNVSGDS VRTSQDPCSS TITTAATALP TATVAGTATN TAPKKHFLSA 300 LVEFSLLESL ESKDNLASIK APDFDTENLE SSMPPSCAKF IKQMQSEMQK LSVEKETIRF 360 EMMSAQAMIN ILQSRIDVLS KENEDLKRMV AQNP*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3swm_A | 3e-46 | 28 | 163 | 14 | 147 | NAC domain-containing protein 19 |
3swm_B | 3e-46 | 28 | 163 | 14 | 147 | NAC domain-containing protein 19 |
3swm_C | 3e-46 | 28 | 163 | 14 | 147 | NAC domain-containing protein 19 |
3swm_D | 3e-46 | 28 | 163 | 14 | 147 | NAC domain-containing protein 19 |
3swp_A | 3e-46 | 28 | 163 | 14 | 147 | NAC domain-containing protein 19 |
3swp_B | 3e-46 | 28 | 163 | 14 | 147 | NAC domain-containing protein 19 |
3swp_C | 3e-46 | 28 | 163 | 14 | 147 | NAC domain-containing protein 19 |
3swp_D | 3e-46 | 28 | 163 | 14 | 147 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |