PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G192500.2.p
Common NameGLYMA_20G192500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 395aa    MW: 44352 Da    PI: 8.3444
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G192500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.82.1e-53341611128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          l+pGfrFhPtdeelv +yLk+kv+gk++++ ++i+evdiy++ePwdL   +++k++++ewyfFs  dkky +g r nrat++gyWkatg+
  Glyma.20G192500.2.p  34 LAPGFRFHPTDEELVIYYLKRKVSGKSFRF-DAISEVDIYRSEPWDLAdkSRLKTRDQEWYFFSALDKKYGNGGRMNRATSKGYWKATGN 122
                          579**************************9.99**************75348899999******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++v + ++++vglkktLvf++grap+g++t+Wvmheyrl
  Glyma.20G192500.2.p 123 DRPVRH-DQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRL 161
                          ******.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-5631166IPR003441NAC domain
PROSITE profilePS5100552.86934179IPR003441NAC domain
PfamPF023651.2E-2736161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MGRETMCLST PPPTTATTTV NPVPPPPPAP PTSLAPGFRF HPTDEELVIY YLKRKVSGKS  60
FRFDAISEVD IYRSEPWDLA DKSRLKTRDQ EWYFFSALDK KYGNGGRMNR ATSKGYWKAT  120
GNDRPVRHDQ RTVGLKKTLV FHSGRAPDGK RTNWVMHEYR LVEEELERAG TGSCQPQDTQ  180
SFNKAPFDVN KLPIETQNLL AVCKRESMAE YPSPEKDDNN CKHMDDYPSP QTDNPKPFSQ  240
IYKRRRHNLN SNNSNVSGDS VRTSQDPCSS TITTAATALP TATVAGTATN TAPKKHFLSA  300
LVEFSLLESL ESKDNLASIK APDFDTENLE SSMPPSCAKF IKQMQSEMQK LSVEKETIRF  360
EMMSAQAMIN ILQSRIDVLS KENEDLKRMV AQNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-462816314147NAC domain-containing protein 19
3swm_B3e-462816314147NAC domain-containing protein 19
3swm_C3e-462816314147NAC domain-containing protein 19
3swm_D3e-462816314147NAC domain-containing protein 19
3swp_A3e-462816314147NAC domain-containing protein 19
3swp_B3e-462816314147NAC domain-containing protein 19
3swp_C3e-462816314147NAC domain-containing protein 19
3swp_D3e-462816314147NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.612850.0epicotyl| hypocotyl
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00612ChIP-seqTransfer from AT3G10490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G192500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020222544.10.0NAC domain containing protein 50 isoform X2
TrEMBLK7N4G20.0K7N4G2_SOYBN; Uncharacterized protein
STRINGXP_004496131.11e-179(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.15e-78NAC domain containing protein 50