PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G184200.1.p
Common NameGLYMA_20G184200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 273aa    MW: 31494.5 Da    PI: 7.8288
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G184200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.2e-171663148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+W++eEd++l+++v+ +G g+W+  +++ g++R +k+c++rw++yl
  Glyma.20G184200.1.p 16 RGPWSAEEDQILINYVQVHGEGNWRELSKRAGLKRLGKSCRLRWLNYL 63
                         89******************************99************97 PP
2Myb_DNA-binding48.71.8e-1569114148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+ + +E++l+++++ +lG++ W++Ia +++ gRt+ ++k++w++yl
  Glyma.20G184200.1.p  69 RGNISSDEEDLIIRLHSLLGNR-WSLIAGRLP-GRTDHEIKNYWNTYL 114
                          78999*****************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.4841163IPR017930Myb domain
SMARTSM007176.5E-151565IPR001005SANT/Myb domain
SuperFamilySSF466891.5E-2915110IPR009057Homeodomain-like
PfamPF002492.2E-161663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-231770IPR009057Homeodomain-like
CDDcd001672.12E-111863No hitNo description
PROSITE profilePS5129425.29664118IPR017930Myb domain
SMARTSM007171.4E-1468116IPR001005SANT/Myb domain
PfamPF002494.9E-1469114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-2471118IPR009057Homeodomain-like
CDDcd001676.25E-1073114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MKRKGRSCDN QDAVNRGPWS AEEDQILINY VQVHGEGNWR ELSKRAGLKR LGKSCRLRWL  60
NYLKPDIKRG NISSDEEDLI IRLHSLLGNR WSLIAGRLPG RTDHEIKNYW NTYLRKKVEQ  120
NHNYNNLPGH NNIPIKLRIE SPRCSKNSLG IVIDPTKSSH PVTIKSMSCT EVMMPTRTVN  180
DFTTSWDKNP FASTPQDGHG HCSEGFLKHF DISDVLMPYE DCRFNEYACV EVPQHFGDEA  240
YKVINAVGET RYDNWKIDDY FPLDYDVGFS LF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-281411825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G184200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0292703e-61AB029270.1 Glycine max mRNA for GmMYB13, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001316018.10.0transcription factor MYB13
TrEMBLK7N4B00.0K7N4B0_SOYBN; Uncharacterized protein
STRINGGLYMA20G32510.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15511512
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-55myb domain protein 5