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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.20G184100.1.p | ||||||||
Common Name | GLYMA_20G184100, LOC100780809 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 275aa MW: 31855.8 Da PI: 6.5948 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56 | 9.3e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd++l ++v+ +G g W+ +++ g++R++k+c++rw++yl Glyma.20G184100.1.p 15 RGPWSAEEDKILMNYVQVHGEGKWRELSKRAGLKRCGKSCRLRWLNYL 62 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.6 | 1e-16 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++yl Glyma.20G184100.1.p 68 RGNISSDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTYL 113 78999*****************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.316 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.52E-30 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-14 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-16 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-24 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.03E-10 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 26.018 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 5.4E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-15 | 68 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-24 | 70 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.35E-11 | 72 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MGRKANCDNQ YAMNRGPWSA EEDKILMNYV QVHGEGKWRE LSKRAGLKRC GKSCRLRWLN 60 YLKPDIKRGN ISSDEEDLII RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN TYLRKKAEHK 120 HDKIPSHNDN IPIKLRIESP GCSKNSFGNV LDPTKSPHPM RCTKVMMPVN DSVNTTNLIT 180 TSWDNHNPSS ASMQLDDYNH CLTGVLQEFD ISDLLMSYED DFRFNGYACV EIPQHIFEDE 240 TCRLDDSLGE EAWYENWKND PYFPQDQDMG FSSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-28 | 13 | 117 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.20G184100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 3e-55 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003555449.1 | 0.0 | transcription factor WER | ||||
Refseq | XP_028221535.1 | 0.0 | transcription factor WER-like | ||||
TrEMBL | A0A445F7C4 | 0.0 | A0A445F7C4_GLYSO; Transcription repressor MYB5 | ||||
TrEMBL | I1NHJ3 | 0.0 | I1NHJ3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G32500.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15511 | 5 | 12 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 2e-58 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.20G184100.1.p |
Entrez Gene | 100780809 |