PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G184000.3.p
Common NameGLYMA_20G184000, LOC100780268
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 561aa    MW: 61395.3 Da    PI: 8.9705
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G184000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-056688123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         + C+ C+k F r  nL+ H r H
  Glyma.20G184000.3.p 66 FICEVCNKGFQREQNLQLHRRGH 88
                         89*******************88 PP
2zf-C2H212.60.00042143165123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k +  +s+ k H +t+
  Glyma.20G184000.3.p 143 WKCEKCSKKYAVQSDWKAHSKTC 165
                          58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.2E-66588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.65E-76588No hitNo description
PROSITE profilePS5015710.996688IPR007087Zinc finger, C2H2
SMARTSM003550.00526688IPR015880Zinc finger, C2H2-like
PfamPF121712.7E-56688IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM00355110108138IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.1E-5131164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.65E-7138163No hitNo description
SMARTSM00355140143163IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MTAASSSTPF LGIREESPQI TTHHQPSTVS PTTAPQKKRR NQPGTPYPDA EVIKLSPKTL  60
MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKSTT KEPKRKVYLC PEPTCVHHDP  120
SRALGDLTGI KKHYYRKHGE KKWKCEKCSK KYAVQSDWKA HSKTCGTREY RCDCGTLFSR  180
RDSFITHRAF CDALAQESAR FPSGLNSLGT HLFGTNHTTS LSLSQVGNQL SQVQKQNQTA  240
TTNSIFLLGN NVGAAATKFE HLIPPLNQSS FGHSPQSMPS SAFFMNNNTN QSLFEEHHSQ  300
HGPLFSTKQL QGLMQLQDLQ GNTNNSDSSS VAAPNNSNLF NLSFFPSSNI STGTIIPDQF  360
NNISGGDQGT TTTTTLYGNS IENVSSPHVG SSFSSIFGNS MENVSSPHMS ATALLQQAAQ  420
MGSTTTTTTN CSSLLRGMCT NNGCKAENDH HHNLQGLMNS IANGNTSLFG SMQGNENNLC  480
GFHNVDESNN KLPQNLSVNF GGSDKLTLDF LGVGGMMRNM SSGGFSQREQ QQHDIGTMSS  540
LDHDLKSAQP NRHFGKSTLQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-35139207371Zinc finger protein JACKDAW
5b3h_F9e-35139207371Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.477910.0seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G184000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003555448.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_014628357.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_028221909.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_028221910.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_028221911.10.0protein indeterminate-domain 5, chloroplastic-like
TrEMBLA0A445F7330.0A0A445F733_GLYSO; Protein indeterminate-domain 4, chloroplastic isoform A
TrEMBLI1NHJ10.0I1NHJ1_SOYBN; Uncharacterized protein
STRINGGLYMA20G32480.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-103indeterminate(ID)-domain 4