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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.20G180000.1.p |
Common Name | GLYMA_20G180000, LOC100818234 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
ARF |
Protein Properties |
Length: 594aa MW: 65247 Da PI: 7.1292 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.20G180000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 70.9 | 1.7e-22 | 124 | 225 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83
f k+lt+sd+++ g +++p+ +ae++ +++ + t++ +d g+ W++++iyr++++r++lt+GW++Fv++++L +gD++vF
Glyma.20G180000.1.p 124 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TIIAKDMLGQCWKFRHIYRGTPRRHLLTTGWSNFVNQKRLVAGDSIVFL 211
89****************************986445444..8************************************************ PP
E-SSSEE..EEEEE-S CS
B3 84 ldgrsefelvvkvfrk 99
+ +++ l+v+++r+
Glyma.20G180000.1.p 212 --RAENGDLCVGIRRA 225
..4488999****997 PP
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2 | Auxin_resp | 110 | 2.4e-36 | 279 | 361 | 2 | 83 |
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83
++ a ++ +FevvY+Pras++eF+vk++ v++a++++++ GmRfkm fetedss++++ +Gt+++v+ +dp+ Wp+S+Wr+L+
Glyma.20G180000.1.p 279 VTCAVNGRPFEVVYYPRASSPEFCVKASVVKAAMQIQWCSGMRFKMPFETEDSSRISWfMGTISSVQVADPILWPDSPWRLLQ 361
6678899**************************************************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 594 aa
Download sequence Send
to blast |
MFMVMDSAER CLDSQLWHAC AGAMVQMPPL NTKVFYFPQG HAEHAHGKRV DFPKNQTRVP 60 PLIPCRLSAM KYMADPDTDE VYVKMRLTPL REHELLDSQD DCFLGNSAGG GGVDQGQEKP 120 PTSFAKTLTQ SDANNGGGFS VPRYCAETIF PRLDYSAEPP VQTIIAKDML GQCWKFRHIY 180 RGTPRRHLLT TGWSNFVNQK RLVAGDSIVF LRAENGDLCV GIRRAKKGIG GGTEFSSGGW 240 NNPLFGGGFL CGSESNLMSG GDHEMLVGRV AAESVVEAVT CAVNGRPFEV VYYPRASSPE 300 FCVKASVVKA AMQIQWCSGM RFKMPFETED SSRISWFMGT ISSVQVADPI LWPDSPWRLL 360 QVVWDEPDLL QNVKCVNPWL VELVSNMPTF NLSAYSPPRK KQRFLQDPYF QVINQLPMPS 420 FSSNLLNYTN SICTIEDNNS SGGIQGARHP QFGLSPSDFP FNKLPADMLL GGFSRLDHAA 480 AQPIMPHCGT FKNNTTTKAN VDISCLLTVG NPGQNFKESN ETKAPHILLF GKLIHTEQKS 540 SNTTSSASTN GNSVSEGNSL KTSNASDGGS PWYKEQHKSD LGNDNVNTLC IAL*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |