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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.20G178500.2.p | ||||||||
Common Name | GLYMA_20G178500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 1664aa MW: 181420 Da PI: 5.6045 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28 | 5e-09 | 784 | 825 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE e +++ ++ +G++ +++Ia+ + ++t+ +c+++++k Glyma.20G178500.2.p 784 PWTPEEREVFLEKFAAFGKD-FRKIASFLD-HKTAADCVEFYYK 825 8*****************99.*********.***********98 PP | |||||||
2 | Myb_DNA-binding | 33.7 | 8.6e-11 | 972 | 1011 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 WT +E +++av +G++ +++Iar++g +R+ +qck ++ Glyma.20G178500.2.p 972 DWTDDEKTAFLQAVSSFGKD-FAKIARCVG-TRSQEQCKVFF 1011 5*****************99.*********.********766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.51E-14 | 768 | 828 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 16.282 | 780 | 831 | IPR017884 | SANT domain |
SMART | SM00717 | 1.4E-9 | 781 | 829 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-6 | 783 | 825 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.60E-7 | 784 | 826 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-6 | 784 | 825 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 12.83 | 968 | 1019 | IPR017884 | SANT domain |
SMART | SM00717 | 2.2E-8 | 969 | 1017 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.47E-10 | 970 | 1019 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-6 | 972 | 1011 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.9E-9 | 972 | 1011 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.10E-7 | 973 | 1011 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1664 aa Download sequence Send to blast |
MPPEPLPWDR KDFFKERKHE RSESLGSVAR WRDSSHHRDF NRWGSAEFRR PPGHGKQGGW 60 HLFSEESGHG YAISRSSSDK MLEDDSRPSF SRGDGKYGRS SRENRGGPFG QRDWRGHSWE 120 PSNGSISFPR RQQDVNNDHR SIDDALAYSP HPHSDFGNAW DQHHLKDQHD KMGGVNDFGA 180 GPRCDRENSL GDWKPLKWTR SGSLSSRGSG FSHSSSSRSM GGADSHEAKA ELLPKSVAVN 240 ESHSGEAAAC ATSSVPSEDT TSRKKPRLGW GEGLAKYEKK KVEVPEASAN KDGPVLSTSN 300 TEPCNLLSPS LVDKSPKVIG FSECASPATP SSVACSSSPG MDDKLFGKTA NVDNDVSNLT 360 GSPAPVSENH FARFSFNLEK FDIDSLNNLG SSIIELVQSD DPTSLDSGPM RSNAINKLLI 420 WKADISKVLE MTESEIDLLE NELKSLKSES GETCPCSCPV ALGSQMVGGD EKYGEEHVGV 480 SDQVIRPLPL KVVDDPNTEK MPLSTNLHSI HENGKEEDID SPGTATSKFV EPLPLIKAVS 540 CDTRGYDNFS RDLDAVQSTA VKCLVPCTTR KEASVSTFVD GNTSMALKDS MDILYKTIIS 600 SNKESANRAS EVFDKLLPKD CCKIEKMEAS SDTCTHTFIM EKFAEKKRFA RFKERVIALK 660 FRALHHLWKE DMRLLSIRKC RPKSHKKNEL SVRSTCNGIQ KNRLSIRSRF PFPGNQLSLV 720 PTSEIINFTS KLLSESQVKV QSNTLKMPAL ILDEKEKMIS KFVSSNGLVE DPLAIEKERA 780 MINPWTPEER EVFLEKFAAF GKDFRKIASF LDHKTAADCV EFYYKNHKSD CFEKIKKQDG 840 CKLGKSYSAK TDLIASGNKK LRTGSSLLGG YGKVKTSRGE DFIEKSSSFD ILGDERETAA 900 AADVLAGICG SLSSEAMSSC ITSSVDPVEG NRDRKFLKVN PLCKPPMTPD VTQDVDDETC 960 SDESCGEMDP TDWTDDEKTA FLQAVSSFGK DFAKIARCVG TRSQEQCKVF FSKGRKCLGL 1020 DLMRPIPENV GSPVNDDANG GESDTDDACV VETGSVVGTD KSGTKTDEDL PLYGTNTYHD 1080 ESHPVEARNL SAELNESKEI IGTEVDLEDA NVTSGAYQIN IDSELGCDGS EVFLCVSNKS 1140 GSVGEQAGII MSDSTEVGKD KANKLGGAAT ELISAPDSSE PCESNSVAED RMVVSEVSSG 1200 GLGNELERYR VSATLCVDDR DNKYEADSGV IVDLKSSVHD LSTMVNSSLS SLGTSCSGLS 1260 FCSENKHVPL GKPHVSALSM DDLLATSNSL LQNTVAVDVQ CEKTASQDQM SSTCDIQGGR 1320 DMHCQNSISN AGHQLPITGN LSDHVDAVSI LQGYPFQVPL KKEMNGDMNC SSSATELPFL 1380 PHKIEQDDDH IKTFQSSDSD KTSRNGDVKL FGKILTNPST TQKPNVGAKG SEENGTHHPK 1440 LSSKSSNLKF TGHHSADGNL KILKFDHNDY VGLENVLENV PMRSYGYWDG NRIQTGLSTL 1500 PDSAILLAKY PAAFSNYPTS SAKLEQPSLQ TYSKNNERLL NGAPTLTTTR DINGSNAVID 1560 YQLFRRDGPK VQPFMVDVKH CQDVFSEMQR RNGFEAISSL QQQSRGVMGM NGVGRPGILV 1620 GGSCSGVSDP VAAIKMHYSN SDKYGGQTGS IAREDESWGG KGD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 7e-17 | 747 | 833 | 9 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 7e-17 | 747 | 833 | 9 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.6619 | 0.0 | cotyledon| flower| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.20G178500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006606235.1 | 0.0 | uncharacterized protein LOC100810588 isoform X5 | ||||
TrEMBL | K7N458 | 0.0 | K7N458_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G31871.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 0.0 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.20G178500.2.p |