PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G178500.2.p
Common NameGLYMA_20G178500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 1664aa    MW: 181420 Da    PI: 5.6045
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G178500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding285e-09784825346
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +WT+eE e +++ ++ +G++ +++Ia+ +  ++t+ +c+++++k
  Glyma.20G178500.2.p 784 PWTPEEREVFLEKFAAFGKD-FRKIASFLD-HKTAADCVEFYYK 825
                          8*****************99.*********.***********98 PP

2Myb_DNA-binding33.78.6e-119721011344
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44  
                            WT +E   +++av  +G++ +++Iar++g +R+ +qck ++
  Glyma.20G178500.2.p  972 DWTDDEKTAFLQAVSSFGKD-FAKIARCVG-TRSQEQCKVFF 1011
                           5*****************99.*********.********766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.51E-14768828IPR009057Homeodomain-like
PROSITE profilePS5129316.282780831IPR017884SANT domain
SMARTSM007171.4E-9781829IPR001005SANT/Myb domain
PfamPF002491.0E-6783825IPR001005SANT/Myb domain
CDDcd001671.60E-7784826No hitNo description
Gene3DG3DSA:1.10.10.604.9E-6784825IPR009057Homeodomain-like
PROSITE profilePS5129312.839681019IPR017884SANT domain
SMARTSM007172.2E-89691017IPR001005SANT/Myb domain
SuperFamilySSF466896.47E-109701019IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-69721011IPR009057Homeodomain-like
PfamPF002495.9E-99721011IPR001005SANT/Myb domain
CDDcd001671.10E-79731011No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1664 aa     Download sequence    Send to blast
MPPEPLPWDR KDFFKERKHE RSESLGSVAR WRDSSHHRDF NRWGSAEFRR PPGHGKQGGW  60
HLFSEESGHG YAISRSSSDK MLEDDSRPSF SRGDGKYGRS SRENRGGPFG QRDWRGHSWE  120
PSNGSISFPR RQQDVNNDHR SIDDALAYSP HPHSDFGNAW DQHHLKDQHD KMGGVNDFGA  180
GPRCDRENSL GDWKPLKWTR SGSLSSRGSG FSHSSSSRSM GGADSHEAKA ELLPKSVAVN  240
ESHSGEAAAC ATSSVPSEDT TSRKKPRLGW GEGLAKYEKK KVEVPEASAN KDGPVLSTSN  300
TEPCNLLSPS LVDKSPKVIG FSECASPATP SSVACSSSPG MDDKLFGKTA NVDNDVSNLT  360
GSPAPVSENH FARFSFNLEK FDIDSLNNLG SSIIELVQSD DPTSLDSGPM RSNAINKLLI  420
WKADISKVLE MTESEIDLLE NELKSLKSES GETCPCSCPV ALGSQMVGGD EKYGEEHVGV  480
SDQVIRPLPL KVVDDPNTEK MPLSTNLHSI HENGKEEDID SPGTATSKFV EPLPLIKAVS  540
CDTRGYDNFS RDLDAVQSTA VKCLVPCTTR KEASVSTFVD GNTSMALKDS MDILYKTIIS  600
SNKESANRAS EVFDKLLPKD CCKIEKMEAS SDTCTHTFIM EKFAEKKRFA RFKERVIALK  660
FRALHHLWKE DMRLLSIRKC RPKSHKKNEL SVRSTCNGIQ KNRLSIRSRF PFPGNQLSLV  720
PTSEIINFTS KLLSESQVKV QSNTLKMPAL ILDEKEKMIS KFVSSNGLVE DPLAIEKERA  780
MINPWTPEER EVFLEKFAAF GKDFRKIASF LDHKTAADCV EFYYKNHKSD CFEKIKKQDG  840
CKLGKSYSAK TDLIASGNKK LRTGSSLLGG YGKVKTSRGE DFIEKSSSFD ILGDERETAA  900
AADVLAGICG SLSSEAMSSC ITSSVDPVEG NRDRKFLKVN PLCKPPMTPD VTQDVDDETC  960
SDESCGEMDP TDWTDDEKTA FLQAVSSFGK DFAKIARCVG TRSQEQCKVF FSKGRKCLGL  1020
DLMRPIPENV GSPVNDDANG GESDTDDACV VETGSVVGTD KSGTKTDEDL PLYGTNTYHD  1080
ESHPVEARNL SAELNESKEI IGTEVDLEDA NVTSGAYQIN IDSELGCDGS EVFLCVSNKS  1140
GSVGEQAGII MSDSTEVGKD KANKLGGAAT ELISAPDSSE PCESNSVAED RMVVSEVSSG  1200
GLGNELERYR VSATLCVDDR DNKYEADSGV IVDLKSSVHD LSTMVNSSLS SLGTSCSGLS  1260
FCSENKHVPL GKPHVSALSM DDLLATSNSL LQNTVAVDVQ CEKTASQDQM SSTCDIQGGR  1320
DMHCQNSISN AGHQLPITGN LSDHVDAVSI LQGYPFQVPL KKEMNGDMNC SSSATELPFL  1380
PHKIEQDDDH IKTFQSSDSD KTSRNGDVKL FGKILTNPST TQKPNVGAKG SEENGTHHPK  1440
LSSKSSNLKF TGHHSADGNL KILKFDHNDY VGLENVLENV PMRSYGYWDG NRIQTGLSTL  1500
PDSAILLAKY PAAFSNYPTS SAKLEQPSLQ TYSKNNERLL NGAPTLTTTR DINGSNAVID  1560
YQLFRRDGPK VQPFMVDVKH CQDVFSEMQR RNGFEAISSL QQQSRGVMGM NGVGRPGILV  1620
GGSCSGVSDP VAAIKMHYSN SDKYGGQTGS IAREDESWGG KGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C7e-17747833994NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D7e-17747833994NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.66190.0cotyledon| flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G178500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006606235.10.0uncharacterized protein LOC100810588 isoform X5
TrEMBLK7N4580.0K7N458_SOYBN; Uncharacterized protein
STRINGGLYMA20G31871.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.10.0MYB family protein