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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.20G176500.1.p |
| Common Name | GLYMA_20G176500, LOC100801536 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
C2H2 |
| Protein Properties |
Length: 510aa MW: 56805.6 Da PI: 6.1053 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.20G176500.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 21.1 | 8.5e-07 | 258 | 279 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23
C++Cgk F+r nL+ H+r H
Glyma.20G176500.1.p 258 FCTICGKGFKRDANLRMHMRGH 279
6*******************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010044 | Biological Process | response to aluminum ion |
| GO:0010447 | Biological Process | response to acidic pH |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 510 aa
Download sequence Send
to blast |
MDPKGSLCAT RSSSLTSPGN GLQTNLSSDP PSFYGVRIES PFEEFIQPSP PTQSVLPGES 60
NTDIDIPDQE NCPLSDSSHT SKLQDWNPSA MLNNLSFLEV KIHQLRDLVH VIVSKKCQPF 120
GQPHELVTQE QQLITADLTS IIVQLISTAG SLLPSVRHTL TNANPLVGQL DQLHGINLPF 180
ESEPSSGIRP QNNSGNKLFD QSIQNDLPNK LEMEQNYNME EHEPKDEEDV DEGENLPPGS 240
YEILQLEKEE ILAPHTHFCT ICGKGFKRDA NLRMHMRGHG DKYKTPAALA KPHKESGSEP 300
KLIKRYSCPY NGCKRNKDHK KFQPLKTILC VKNHYKRTHC DKSYTCSRCN TKKFSVMADL 360
KTHEKHCGKD KWLCSCGTTF SRKDKLFGHI ALFQGHTPAI PLDETKGMAE PPDIQNRESN 420
NKVESINFCF GSNSSSENVV QNMMDMKGNN DDPMNYFSSL NFEGCNFGAF NEFSQPPFED 480
SDGCFSFPMS GSFNYAPKFG GGESSSDNL*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots (e.g. root tips and lateral roots), leaves, flowers (e.g. stigma, sepal, anther, and filament), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU127298 | 0.0 | EU127298.1 Glycine max C2-H2 zinc finger protein (STOP1) mRNA, complete cds. |
| GenBank | EU418733 | 0.0 | EU418733.1 Glycine max C2-H2 zinc finger protein (STOP1) gene, complete cds. |
| Publications
? help Back to Top |
- Kobayashi Y, et al.
Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions.
Plant Physiol., 2013. 163(1): p. 180-92
[PMID:23839867] - Yokosho K,Yamaji N,Ma JF
Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench).
Plant Cell Physiol., 2014. 55(12): p. 2077-91
[PMID:25273892] - Geng X, et al.
LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis.
Plant J., 2017. 90(3): p. 491-504
[PMID:28181322] - Balzergue C, et al.
Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation.
Nat Commun, 2017. 8: p. 15300
[PMID:28504266] - Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A
Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation.
Front Plant Sci, 2017. 8: p. 822
[PMID:28567051] - Jiang F, et al.
Identification and characterization of suppressor mutants of stop1.
BMC Plant Biol., 2017. 17(1): p. 128
[PMID:28738784] - Daspute AA, et al.
Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms.
Front Plant Sci, 2017. 8: p. 1358
[PMID:28848571] - Sharma A,Wai CM,Ming R,Yu Q
Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis.
Genome Biol Evol, 2017. 9(9): p. 2170-2190
[PMID:28922793] - Zhang Y, et al.
The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis.
Front Plant Sci, 2018. 9: p. 118
[PMID:29491872]
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