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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.20G172100.2.p |
| Common Name | GLYMA_20G172100, LOC100787232 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
NAC |
| Protein Properties |
Length: 550aa MW: 61694.6 Da PI: 4.5048 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.20G172100.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 172.9 | 9.7e-54 | 20 | 146 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89
+pGfrFhPtdeelv++yLk+k+ gk+l+l +vi+e+d+yk++P+dLp + +k+++++w+fF++rd+ky++g r+nrat++gyWkatgkd
Glyma.20G172100.2.p 20 MPGFRFHPTDEELVMYYLKRKICGKRLKL-DVIHETDVYKWDPEDLPgQsILKTGDRQWFFFCHRDRKYPNGGRSNRATRRGYWKATGKD 108
69***************************.9***************96446788999********************************* PP
NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
++v++ +++ vg+kktLvfy grap+ge+tdWvmhey+l
Glyma.20G172100.2.p 109 RNVIC-NSRSVGVKKTLVFYAGRAPSGERTDWVMHEYTL 146
*****.999****************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0070301 | Biological Process | cellular response to hydrogen peroxide |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005789 | Cellular Component | endoplasmic reticulum membrane |
| GO:0016021 | Cellular Component | integral component of membrane |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 550 aa
Download sequence Send
to blast |
MGEASGAGSA DCFSQMMSSM PGFRFHPTDE ELVMYYLKRK ICGKRLKLDV IHETDVYKWD 60
PEDLPGQSIL KTGDRQWFFF CHRDRKYPNG GRSNRATRRG YWKATGKDRN VICNSRSVGV 120
KKTLVFYAGR APSGERTDWV MHEYTLDEEE LKRCQGVKDY YALYKVYKKS GPGPKNGEQY 180
GAPFNEEEWA DDDIVDFNIN SADQEAPNDV ADNVNVPLPF LDDEINNIIR EILDDELVLD 240
QQHVNGYPDF PQVVSEETQS TVVDQFSEDV MLPEPVRISH PSCQFFDAQP SFDFNRPVTS 300
HLHVSETSEV TSASNIKTKE LDFNEDGFLE INDLIDTEPT LSNVENSVEY QHFEDGLSEL 360
DLFQDAQMFL RDLGPIIHET DSHAYTNALV SSNIECQSYQ LLPNPEDANQ TVGEFWMHGE 420
SNQLSSPGVV YESVGFPTEG NNNQSSTVED VATSSLSSAL WAFVESIPTT PASAAESALV 480
NRALNRMSSF SRLKIKHTNI AASGKDTGTM KRAGRKGLPF LFFSILIALC AFCWVFVGNL 540
RLVGRSISP*
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| Nucleic Localization
Signal ? help
Back to Top |
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| No. |
Start |
End |
Sequence |
| 1 | 37 | 46 | KRKICGKRLK |
| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Gma.28750 | 0.0 | cotyledon| hypocotyl| leaf| root| seed coat| somatic embryo| stem |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KF657305 | 0.0 | KF657305.1 Glycine max NAC transcription factor (SNAC38) mRNA, complete cds. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Van Aken O, et al.
Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
Plant Physiol., 2016. 171(3): p. 2150-65
[PMID:27208304] - Van Aken O,Ford E,Lister R,Huang S,Millar AH
Retrograde signalling caused by heritable mitochondrial dysfunction is partially mediated by ANAC017 and improves plant performance.
Plant J., 2016. 88(4): p. 542-558
[PMID:27425258] - Hu Z, et al.
Mitochondrial Defects Confer Tolerance against Cellulose Deficiency.
Plant Cell, 2016. 28(9): p. 2276-2290
[PMID:27543091] - Chi YH, et al.
The membrane-tethered NAC transcription factor, AtNTL7, contributes to ER-stress resistance in Arabidopsis.
Biochem. Biophys. Res. Commun., 2017. 488(4): p. 641-647
[PMID:28088515] - Van Aken O,Pogson BJ
Convergence of mitochondrial and chloroplastic ANAC017/PAP-dependent retrograde signalling pathways and suppression of programmed cell death.
Cell Death Differ., 2017. 24(6): p. 955-960
[PMID:28498364] - Cheng P, et al.
The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis.
Front Plant Sci, 2018. 9: p. 182
[PMID:29497438]
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