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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.20G158100.1.p |
| Common Name | GLYMA_20G158100, LOC100782075 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
MYB |
| Protein Properties |
Length: 310aa MW: 34732.2 Da PI: 7.7766 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.20G158100.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 61.5 | 1.8e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT+eEd+ lvd+++++G g+W++ +++ g+ R++k+c++rw +yl
Glyma.20G158100.1.p 14 RGAWTPEEDQALVDYIQKHGHGSWRSLPKHAGLLRCGKSCRLRWINYL 61
89******************************99************97 PP
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| 2 | Myb_DNA-binding | 53 | 7.8e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T eE+ +v+++ +lG++ W++Ia+ ++ gRt++++k++w+++l
Glyma.20G158100.1.p 67 RGPFTSEEESTIVQLHGMLGNR-WASIASQLP-GRTDNEIKNFWNTHL 112
89********************.*********.************996 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 310 aa
Download sequence Send
to blast |
MGKAPCCEKH GVRRGAWTPE EDQALVDYIQ KHGHGSWRSL PKHAGLLRCG KSCRLRWINY 60
LRPGIKRGPF TSEEESTIVQ LHGMLGNRWA SIASQLPGRT DNEIKNFWNT HLKKRLLRSC 120
HSQRAKQLCV IPDQSIVKSE SPSTRHMVQW ESVRVETEAR LSLESTMLNS WPTSKTCPDH 180
FLQLWHSEVG KSFRMIKGKE EGVVSQSLIS QPSSSSKLES CSDVSLQVKT NTGTSSCIPK 240
LEDVSMVHEQ TSSYKPKLDD DTAGSDSGNY EFLDTSDSAL KHLLHMPDSD MGFLGHNDHF 300
QNLLDGTCD*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in cotyledon and hypocotyls of germinating seeds. {ECO:0000269|PubMed:19232308}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in the shoot apex, young flower buds, developing carpels and siliques (PubMed:19232308). Expressed in floral meristem, initiating floral primordia and developing flowers (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC235230 | 0.0 | AC235230.1 Glycine max strain Williams 82 clone GM_WBb0026I18, complete sequence. |
