PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 334aa MW: 37934 Da PI: 9.8818

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.20G157900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.2	1e-14	78	125	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd +l + + ++G g+W++++ + g+ R +k+c++rw +yl Glyma.20G157900.1.p 78 KGLWSPEEDNKLRNHILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYL 125 678*******************************************97 PP
2	Myb_DNA-binding	55.4	1.4e-17	131	176	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E+e ++ ++++lG++ W++I+++++ gRt++++k++w++yl Glyma.20G157900.1.p 131 RGKFSKQEEETILTLHHMLGNK-WSRISQHLP-GRTDNEIKNYWHSYL 176 89******************.*****.**********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.863	73	125	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.0E-22	73	128	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.26E-28	75	172	IPR009057	Homeodomain-like
SMART	SM00717	2.8E-11	77	127	IPR001005	SANT/Myb domain
Pfam	PF00249	3.8E-13	78	125	IPR001005	SANT/Myb domain
CDD	cd00167	1.65E-9	81	125	No hit	No description
PROSITE profile	PS51294	26.07	126	180	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-25	129	180	IPR009057	Homeodomain-like
SMART	SM00717	2.2E-16	130	178	IPR001005	SANT/Myb domain
Pfam	PF00249	9.1E-17	131	176	IPR001005	SANT/Myb domain
CDD	cd00167	4.32E-11	133	176	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MALVRTIFSY SNFNMHPLVD SSRLSGSLLL PFISSTAYIS HRNRTKTENP SLPLKWNSVR 60 LSKMGYQPLE KGKPKHKKGL WSPEEDNKLR NHILKHGHGC WSSVPIKAGL QRNGKSCRLR 120 WINYLRPGLK RGKFSKQEEE TILTLHHMLG NKWSRISQHL PGRTDNEIKN YWHSYLKKRV 180 AKAKEMESHN QIKYASSSSD TMDSSHSLQN LATQCPLNYN FTKEASQSSL PKLLFAEWLS 240 LDHLNSANSV DSLGLRNGFD QNSSFHEAAI HDMSEVPFGG EYNRCVSNIS APEMFNSQLK 300 YGNQMVENGY IHCMPGVDLS SNFSISNDAI MYI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	9e-23	72	180	1	108	B-MYB
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed at very low level. Expressed in cauline leaves. {ECO:0000269\|PubMed:11581165}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269\|PubMed:11581165, ECO:0000269\|PubMed:19482971}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.20G157900.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269\|PubMed:9839469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT097734	0.0	BT097734.1 Soybean clone JCVI-FLGm-16G14 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003556102.1	0.0	transcription factor LAF1
Swissprot	Q9M0K4	2e-57	LAF1_ARATH; Transcription factor LAF1
TrEMBL	A0A0R0ECB4	0.0	A0A0R0ECB4_SOYBN; Uncharacterized protein
STRING	GLYMA20G29710.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3830	31	61
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48920.1	2e-61	myb domain protein 45

Link Out ? help Back to Top
Phytozome	Glyma.20G157900.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]