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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.20G156500.1.p |
Common Name | GLYMA_20G156500, LOC100785102 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
HD-ZIP |
Protein Properties |
Length: 778aa MW: 85118.9 Da PI: 6.1507 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.20G156500.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 67.8 | 1.3e-21 | 79 | 134 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++ +++t++q++eLe++F+++++p++++r +L+k+lgL+ +qVk+WFqNrR+++k
Glyma.20G156500.1.p 79 KKRYHRHTPHQIQELEAFFKECPHPDEKQRLDLSKRLGLENKQVKFWFQNRRTQMK 134
688999***********************************************999 PP
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2 | START | 179.1 | 2.6e-56 | 289 | 512 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78
la++a++el+k+ +ae+p+W ks e+ n +e+ + f++ + + +ea r++g+v+ ++ lve+l+d + +W e+++ +
Glyma.20G156500.1.p 289 LALAAMEELLKMTQAESPLWIKSLdgekEIFNHEEYARLFSPCIGpkpagYVTEATRETGIVIINSLALVETLMDAN-RWAEMFPsmiaR 377
6899********************99988999********99998********************************.*******99999 PP
EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS
START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161
a l+vis+g galq+m ae q+lsplvp R + f+R+++q+ +g+w++vdvS++ + + ++++ +++lpSg+++++++ng+
Glyma.20G156500.1.p 378 AINLDVISNGmggtrnGALQVMHAEVQLLSPLVPvRQVRFIRFCKQHAEGVWAVVDVSIEIGHDAANAQPSISCRRLPSGCIVQDMPNGY 467
999*********************************************************9999999999******************** PP
EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
skvtw+eh++++++++h+l+r+l++sg+ +ga +w atlqrqce+
Glyma.20G156500.1.p 468 SKVTWLEHWEYDENVVHQLYRPLLSSGVGFGAHRWIATLQRQCEC 512
*******************************************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 778 aa
Download sequence Send
to blast |
MIFISQSIPS SMLNSSSFSY STQRKMEGPS EIGLIGENFD AGLMGRMRDD EYESRSGSDN 60 FEGASGDDQD GGDDQPQRKK RYHRHTPHQI QELEAFFKEC PHPDEKQRLD LSKRLGLENK 120 QVKFWFQNRR TQMKTQLERH ENIMLRQEND KLRAENSLIK EAMSNPVCNN CGGPAIPGQI 180 SFEEHQIRIE NARLKDELNR ICVLANKFLG KPISSLTSPM ALTTSNSGLE LGIGRNGIGG 240 SSTLGTPLPM GLDLGDGVLG TQPAMPGVRS ALGLMGNEVQ LERSMLIDLA LAAMEELLKM 300 TQAESPLWIK SLDGEKEIFN HEEYARLFSP CIGPKPAGYV TEATRETGIV IINSLALVET 360 LMDANRWAEM FPSMIARAIN LDVISNGMGG TRNGALQVMH AEVQLLSPLV PVRQVRFIRF 420 CKQHAEGVWA VVDVSIEIGH DAANAQPSIS CRRLPSGCIV QDMPNGYSKV TWLEHWEYDE 480 NVVHQLYRPL LSSGVGFGAH RWIATLQRQC ECLAILMSSS ISSDSHTALS QAGRRSMLKL 540 AQRMTSNFCS GVCASSARKW DSLHIGTLGD DMKVMTRKNV DDPGEPPGIV LSAATSVWMP 600 VSRQRLFDFL RDERLRSEWD ILSNGGPMQE MVHIAKGQGH GNCVSLLRAN AVNANDSSML 660 ILQETWMDAS CSVVVYAPVD VQSLNVVMSG GDSAYVALLP SGFAILPDGH CNDNGCNGSL 720 QKGRGSDDGS GGSLLTVGFQ ILVNSLPTAK LTVESVDTVN NLISCTIQKI KAALRVA*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |