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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.20G154200.1.p |
| Common Name | GLYMA_20G154200, LOC100818935 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 215aa MW: 24734.1 Da PI: 9.6846 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.20G154200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 89.9 | 1.3e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+ie+++ rqv fskRr g+lKKA+ELSvLCdaevavi+fs++g+lye+ss
Glyma.20G154200.1.p 9 KKIEDTTSRQVAFSKRRSGLLKKAYELSVLCDAEVAVIVFSQNGRLYEFSS 59
68***********************************************96 PP
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| 2 | K-box | 68.6 | 2e-23 | 84 | 171 | 12 | 99 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
++l+ ++ + k+ie L++++R+llG++++s+s+ eL+ +e+qL +sl+++R++K++l++eqi++l+ +e +l +en +L+++++
Glyma.20G154200.1.p 84 DYIQQLKLDSVSMTKKIELLEHSKRKLLGQSVSSCSFDELKGIEEQLRTSLQRVRQRKTQLYTEQIDRLRSQESNLLKENAKLSAMYQ 171
556888999999***********************************************************************98875 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 215 aa
Download sequence Send
to blast |
MARGKVQLKK IEDTTSRQVA FSKRRSGLLK KAYELSVLCD AEVAVIVFSQ NGRLYEFSSS 60
DMTKILERYR EYTKDVPGSK FGDDYIQQLK LDSVSMTKKI ELLEHSKRKL LGQSVSSCSF 120
DELKGIEEQL RTSLQRVRQR KTQLYTEQID RLRSQESNLL KENAKLSAMY QRAERSSRQQ 180
WPRHTQAEAE PHCSSSQSLD VDTELFIGLP KQQC*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in quiescent center (QC) cells of root tips (PubMed:18162590, PubMed:21689171). Expressed at the base of the petiole of cotyledons and leaves, in flower buds, petals, sepals and abscission zone of flowers and siliques. {ECO:0000269|PubMed:18162590, ECO:0000269|PubMed:21689171}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}. |
