![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.20G152900.2.p | ||||||||
Common Name | GLYMA_20G152900, LOC100775836 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 248aa MW: 28087.7 Da PI: 7.3957 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37 | 6.3e-12 | 74 | 126 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ h e+E++RR+++ + + Lr+llP ++ ++K s ++ +Av+YI++Lq Glyma.20G152900.2.p 74 KKMVHREIEKQRRQEMATLHASLRSLLPLDF--IKGKRSISDQMNEAVNYINHLQ 126 6889*************************75..*********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.58E-12 | 73 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.767 | 73 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.20E-8 | 74 | 130 | No hit | No description |
Pfam | PF00010 | 5.4E-9 | 74 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-10 | 74 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0098 | 79 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0090575 | Cellular Component | RNA polymerase II transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 248 aa Download sequence Send to blast |
MFPLQRGNEL VIQFSNGHHP QHKISQDLIL DDQDIDQSPL VGYSDKKLRT SRPKKLFYHE 60 ADTCHANSNQ EYTKKMVHRE IEKQRRQEMA TLHASLRSLL PLDFIKGKRS ISDQMNEAVN 120 YINHLQKNIK ELSDKRDKLK KKPSIINSSP EDHENYKHAS SGFTVHQNSG GAVGIEISGF 180 SEEEVPLSKL LELVFEEGLE VVNCLSTKVN GRLLHSLQCE VDNSGSVDLS ELRRKFSDVI 240 PSLRCSA* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.60387 | 0.0 | flower| root |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.20G152900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT096600 | 0.0 | BT096600.1 Soybean clone JCVI-FLGm-20L20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001242511.2 | 0.0 | transcription factor bHLH118-like | ||||
Refseq | NP_001356061.1 | 0.0 | transcription factor bHLH118-like | ||||
Refseq | XP_028220645.1 | 0.0 | transcription factor bHLH118-like | ||||
TrEMBL | A0A445F5C2 | 0.0 | A0A445F5C2_GLYSO; Transcription factor bHLH118 isoform A | ||||
TrEMBL | I1NGM6 | 0.0 | I1NGM6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G29120.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G51780.1 | 3e-34 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.20G152900.2.p |
Entrez Gene | 100775836 |