PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G149100.1.p
Common NameGLYMA_20G149100, LOC100811662
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CPP
Protein Properties Length: 775aa    MW: 84290.3 Da    PI: 6.3788
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G149100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR505.7e-16486524240
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          ++k+CnCkkskClk+YCeCfaag++C e C C dC+Nk 
  Glyma.20G149100.1.p 486 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCACRDCFNKP 524
                          689**********************************96 PP
2TCR50.25e-16571610140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN+ 
  Glyma.20G149100.1.p 571 RHKRGCNCKKSSCLKKYCECYQGGVGCSVSCRCEGCKNTY 610
                          589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.3E-18485526IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.797486611IPR005172CRC domain
PfamPF036381.8E-11488523IPR005172CRC domain
SMARTSM011142.6E-17571612IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.5E-11573609IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MDTPDRSKIN TPLSQFEDSP VFKYISNLSP IEPVKSVHVT QTFNSYSFSS PPSVFTSPHG  60
NCHKESRFLR RHNLLETSKP KVSSEDVNNV YSCEETPADS AQACHESSEQ QENTAQKISV  120
ADASIEPCNE NKNPNISIEL PQVLKYNLGS PGYEPLLYGD EANSLLELPG NGKPASDVAS  180
VPEGSEKDSI EGEMHLPGLC QIEEAKVEGQ DCGVDSLITE ASDLLMFSPP EAFKGLNKQL  240
NPSIELSNIM TVIPQFATND GQQMHIGNAV ASGSEHEIED HPSESAAATG TSQRQDNLGN  300
LALVTSNPSE KMDNKLVYVT HRGIRRRCLD FEMASVQRRN PADNSNTNSS TAKSEERNVS  360
NEKQLLPTKH SGDSRRCVLP GIGLHLNALA SLKDCKNIKI DTLSSGRQPN LLSSPSSVQL  420
SPSQEHQLSL VPASVERDLE PLENEVQPGE DCTQSLVLVQ MAGEDFQQNS PKKKRRKLEP  480
AGEGESCKRC NCKKSKCLKL YCECFAAGVY CIEPCACRDC FNKPIHVETV LQTRQQIESR  540
NPLAFAPKVI RSSDSVSEIG DDLNKTPASA RHKRGCNCKK SSCLKKYCEC YQGGVGCSVS  600
CRCEGCKNTY GRKDGSVPSG LEAEPEEETE ACEKGVVENA SWKTETQNTE DHPDQSLATT  660
PLPLSRSLLP LSFSSKGKPP RSFVTTISSS GLFVSQKLGK SNAPRSQHQP KCVKPLQTVP  720
DDDSPVTCIK TSSPNGKRIS SPNCDVGSSP TTRRGGRKLI LQSISSFPSL TPHH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A8e-1749060814120Protein lin-54 homolog
5fd3_B8e-1749060814120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1470477PKKKRRKL
2471475KKKRR
3471476KKKRRK
4472476KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.177990.0cotyledon| flower| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G149100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556061.10.0protein tesmin/TSO1-like CXC 3
RefseqXP_028222918.10.0protein tesmin/TSO1-like CXC 3
TrEMBLA0A445F5C80.0A0A445F5C8_GLYSO; Protein tesmin/TSO1-like CXC 2 isoform A
TrEMBLK7N3J00.0K7N3J0_SOYBN; Uncharacterized protein
STRINGGLYMA20G28740.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Representative plantOGRP9931755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-110TESMIN/TSO1-like CXC 2