PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G148500.1.p
Common NameGLYMA_20G148500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 376aa    MW: 42488.3 Da    PI: 8.1363
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G148500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1356.5e-421042421132
                  TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa........seceaesssssa 82 
                          a++kkdrhskihT++g+RdRRvRls+e+a++fFdLqd+L fdk+s+t +WL+++++ aikel++++ s +        s+  +++s++++
  Glyma.20G148500.1.p 104 ATAKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTFDWLFTKSENAIKELARSKHSGSvsrgdikySRYPSVDSNNNN 193
                          579**************************************************************5554432222221222222222222 PP

                  TCP  83 snsssg.....kaaksaakskksqksaasalnlakesrakarararertrekmri 132
                               +       a+   k k +q+++ +  + +kesr++arararert  km+ 
  Glyma.20G148500.1.p 194 -----KslvdgGDASRGRKLKWAQRDDVC-VQNKKESRERARARARERTCYKMCS 242
                          .....134455444444455656666653.666789*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.1E-39105241IPR005333Transcription factor, TCP
PROSITE profilePS5136934.256107165IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.643222239IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MSSSTYDSSN LFPNFPSSSY PILPFLIDPE NDFASHTLLD DHPLVVPAGL IHDPPLLPEE  60
TVANFAVAAD CTAAMLEHDA ANTNYGSHYG SSVSNFLTQK PAAATAKKDR HSKIHTSQGL  120
RDRRVRLSSE IARKFFDLQD MLEFDKPSNT FDWLFTKSEN AIKELARSKH SGSVSRGDIK  180
YSRYPSVDSN NNNKSLVDGG DASRGRKLKW AQRDDVCVQN KKESRERARA RARERTCYKM  240
CSCSRRVQQK DSDERFPATT NTQMLHQLRS SIQPELEDQP RARWVQPYYN NPYFIDNEAP  300
RNGFNVIEES IMIKRNMKPS SHQNLVIPRD ASFNNNEFPL LPYSSTTPNW DSTNGAVNFG  360
GISTMNLSTC FMNPW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224234RERARARARER
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G148500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006606066.10.0transcription factor DICHOTOMA
TrEMBLI1NGH40.0I1NGH4_SOYBN; Uncharacterized protein
STRINGGLYMA20G28670.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.28e-25TCP family protein