PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G142200.1.p
Common NameGLYMA_20G142200, LOC100793758
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 732aa    MW: 80362.1 Da    PI: 6.6104
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G142200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.8e-1948103156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rr+ t++t++q+ e+e++F+ +++p++++r+ L ++lgL+  q+k+WFqN+R++ k
  Glyma.20G142200.1.p  48 RRRHTRHTHHQISEMESFFKGCPHPDEKQRKALGRELGLEPLQIKFWFQNKRTQVK 103
                          7999************************************************9877 PP
2START165.24.8e-522564706206
                          HHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
                START   6 aaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                          a +e +++ l+++p+Wv      e  n+de+l+ f+++ +      ++e +r +++v+m +++lve l+d++ qW++++     +a t+e
  Glyma.20G142200.1.p 256 AIEEINRLSLSGDPLWVPGNygsEVVNEDEYLRVFPRGIGptllgARTESSRQTAIVIMHHMKLVEMLMDVN-QWSNMFCgivsRAVTHE 344
                          567788889999*****988888889***********999********************************.******999******** PP

                          EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS
                START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166
                          v+s+g      ga q+m+ae+q++splvp Rd +f+R+++++++ +w++vd S d+ ++        + +++pSg++i++++ng+skv+w
  Glyma.20G142200.1.p 345 VLSTGetirydGACQVMSAEFQVPSPLVPtRDNYFIRFCKKHQGQSWAVVDFSMDHLRPGAI----TKIRRRPSGCIIQELPNGYSKVIW 430
                          ***********************************************************985....44448******************* PP

                          EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          vehv+++++ +h+l++ lv s+la+gak+wva+ +r ce+
  Glyma.20G142200.1.p 431 VEHVEVDDSEVHNLYKNLVDSTLAFGAKRWVAAIDRTCER 470
                          **************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-193399IPR009057Homeodomain-like
SuperFamilySSF466896.27E-1843111IPR009057Homeodomain-like
PROSITE profilePS5007116.24445105IPR001356Homeobox domain
SMARTSM003893.8E-1747109IPR001356Homeobox domain
PfamPF000461.7E-1648103IPR001356Homeobox domain
CDDcd000863.04E-1358106No hitNo description
PROSITE profilePS5084834.331242473IPR002913START domain
CDDcd088758.59E-96246469No hitNo description
SMARTSM002342.6E-42251470IPR002913START domain
PfamPF018521.2E-43257470IPR002913START domain
SuperFamilySSF559616.87E-26305472No hitNo description
Gene3DG3DSA:3.30.530.202.3E-4354464IPR023393START-like domain
SuperFamilySSF559612.88E-21491722No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MEMSLQRTSS ENNSGRNREE QEPSNKETTM EAPASGDDDQ DLEEGFKRRR HTRHTHHQIS  60
EMESFFKGCP HPDEKQRKAL GRELGLEPLQ IKFWFQNKRT QVKTQQERYE NNLLRVENDK  120
LRAENRRYRN ALANALCPSC GGPTALGEMS FDEQQLRIEN ARLKEEIASM SGPAAKHAGK  180
SGSNSYCNMP SQNQMPSRSL DLGVGNNNKN NNFVAVAQAQ PAAMVGEIYG GNDPLRELPL  240
FSCFDKTLIG EIGLVAIEEI NRLSLSGDPL WVPGNYGSEV VNEDEYLRVF PRGIGPTLLG  300
ARTESSRQTA IVIMHHMKLV EMLMDVNQWS NMFCGIVSRA VTHEVLSTGE TIRYDGACQV  360
MSAEFQVPSP LVPTRDNYFI RFCKKHQGQS WAVVDFSMDH LRPGAITKIR RRPSGCIIQE  420
LPNGYSKVIW VEHVEVDDSE VHNLYKNLVD STLAFGAKRW VAAIDRTCER LASAMATNIP  480
QGALCVITSH ESRKSMMKLA ERMVLSFCTG VGASTANAWT PLPSGLEDVR VMTRKSVDDP  540
GRPPGIVLSA ATSLWLPVPA RRVFEFLRSE NTRNQWDILS TGAQVNELAH IANGRDHGNC  600
VSLLRVNTQN VGQNNMLILQ ESFIDATGSF VIYAPIDVAA INVVLGGGNP DYVALLPSGF  660
AVLPDGPGLN GGPGPICEAG SGGGCLLTVA FQILVDSAPT SKISVGSVTT VNSLIKRTVE  720
KIRDAVSLDG N*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed in the apical cell after the first asymmetric division of the zygote. Expressed in all proembryo cells until the eight-cell stage, and then restricted to the protoderm in the 16-cell proembryo. Not detected in the torpedo stage, but reappeared later in the L1 layer of the shoot apical meristem in the mature embryo. After germination, the L1 layer-specific expression pattern is maintained in the vegetative shoot apical meristem, inflorescence, floral meristems, and the young floral organ primordia. Finally, expressed in the protoderm of the ovule primordia and integuments and gradually restricted to the endothelium surrounding the embryo sac. {ECO:0000269|PubMed:10571886, ECO:0000269|PubMed:8989876}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G142200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003555330.20.0homeobox-leucine zipper protein MERISTEM L1 isoform X2
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLI1NGA80.0I1NGA8_SOYBN; Uncharacterized protein
STRINGGLYMA20G28010.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2237224
Representative plantOGRP14515136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]