PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

M-type_MADS

Protein Properties

Length: 240aa MW: 26657.7 Da PI: 10.4396

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.20G136400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	72.7	3.1e-23	16	64	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ +n+sn qvtfskRr g++KKA+EL++LC+a+va+i+fs+ k++ + Glyma.20G136400.1.p 16 KKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALIVFSPGEKVFSF 64 5689***************************************999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.2E-34	8	67	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	24.992	8	68	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.02E-37	9	78	No hit	No description
SuperFamily	SSF55455	4.97E-29	9	85	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.2E-20	10	30	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.2E-25	18	64	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.2E-20	30	45	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.2E-20	45	66	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MSGPKKSRGR QKIEMKKMSN ESNLQVTFSK RRSGLFKKAS ELCTLCGADV ALIVFSPGEK 60 VFSFGHPNVD AVIDRYLERA PPTESFMEAH RMAHVRDLNA QLTQISNHLD AGRKRAEELN 120 LMKKEAQAHL WWARPVDGMS MAQMKQFKAA LEELKKQVAR LADRAMLQSV TNPTHEFFPA 180 AGVSSSSSSN SNSNPLSPQV FSPHLIQPPM LQNFMSMMPR HHGFNYMGMG GYGPAAGFF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	5e-18	9	85	2	78	MEF2 CHIMERA
6byy_B	5e-18	9	85	2	78	MEF2 CHIMERA
6byy_C	5e-18	9	85	2	78	MEF2 CHIMERA
6byy_D	5e-18	9	85	2	78	MEF2 CHIMERA
6bz1_A	5e-18	9	85	2	78	MEF2 CHIMERA
6bz1_B	5e-18	9	85	2	78	MEF2 CHIMERA
6bz1_C	5e-18	9	85	2	78	MEF2 CHIMERA
6bz1_D	5e-18	9	85	2	78	MEF2 CHIMERA
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269\|PubMed:18334668}.
Uniprot	TISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269\|PubMed:18334668}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269\|PubMed:18334668}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.20G136400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003555306.1	1e-180	agamous-like MADS-box protein AGL62
Swissprot	Q9FKK2	2e-57	AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBL	I1NG49	1e-178	I1NG49_SOYBN; Uncharacterized protein
STRING	GLYMA20G27320.1	1e-179	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF128	33	331
Representative plant	OGRP16	17	761

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	1e-59	AGAMOUS-like 62

Link Out ? help Back to Top
Phytozome	Glyma.20G136400.1.p
Entrez Gene	100779916

Publications ? help Back to Top
Xu W, et al. Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds. Plant Cell, 2016. 28(6): p. 1343-60 [PMID:27233529] Figueiredo DD,Batista RA,Roszak PJ,Köhler C Auxin production couples endosperm development to fertilization. Nat Plants, 2015. 1: p. 15184 [PMID:27251719] Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C Auxin production in the endosperm drives seed coat development in Arabidopsis. Elife, 2017. [PMID:27848912] Fiume E,Coen O,Xu W,Lepiniec L,Magnani E Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal. Plant Signal Behav, 2017. 12(8): p. e1339000 [PMID:28613109] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]