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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.20G133000.1.p |
Common Name | GLYMA_20G133000, LOC100816269 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
LBD |
Protein Properties |
Length: 172aa MW: 18744.7 Da PI: 8.0672 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.20G133000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 95.3 | 6.6e-30 | 2 | 102 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85
+C++C+vlr++C++dC+l+ ++ p++q++++ +v+k+FG+++++++l+++p ++r+++++sl+yeA r+ +Pv+Gavg+++++++
Glyma.20G133000.1.p 2 SCNGCRVLRKGCSDDCMLRHCLvwienPQAQAHATLFVAKFFGRATLMSFLSSVPSNQRSALFQSLLYEAVGRTINPVNGAVGLLWTGNW 91
6***************************************************************************************** PP
DUF260 86 qleqlkaelal 96
+l+q+ +e +l
Glyma.20G133000.1.p 92 HLCQMGVEKVL 102
****9887665 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 172 aa
Download sequence Send
to blast |
MSCNGCRVLR KGCSDDCMLR HCLVWIENPQ AQAHATLFVA KFFGRATLMS FLSSVPSNQR 60 SALFQSLLYE AVGRTINPVN GAVGLLWTGN WHLCQMGVEK VLRGGAALTP LPQVITSVER 120 VMVGGEIIMC HQPKKQHVGT PPEEESEIST FGSRPLDSAP QSQTNLLTLF F*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC235177 | 0.0 | AC235177.1 Glycine max strain Williams 82 clone GM_WBb0007H11, complete sequence. |