PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G132100.1.p
Common NameGLYMA_20G132100, LOC100814153
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 810aa    MW: 93087.5 Da    PI: 7.4511
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G132100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR189.16.1e-2848135191
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e+++    ++r+ ++++t+Cka+++vk++ dgkw ++++ +eHnHel+
  Glyma.20G132100.1.p  48 SFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDSG---SSRRPSVKKTDCKACMHVKRKPDGKWIIHEFIKEHNHELV 134
                          5****************************************999888...7788889********************************8 PP

                 FAR1  91 p 91 
                          p
  Glyma.20G132100.1.p 135 P 135
                          6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.8E-2548135IPR004330FAR1 DNA binding domain
PfamPF105512.1E-30255348IPR018289MULE transposase domain
PROSITE profilePS509669.285535571IPR007527Zinc finger, SWIM-type
PfamPF044346.2E-7537570IPR007527Zinc finger, SWIM-type
SMARTSM005753.4E-8546573IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 810 aa     Download sequence    Send to blast
MGDALNEVQH MGGAPAASPK RDITLLEGDK DFELHNGIEF ESHEAAYSFY QEYAKSMGFT  60
TSIKNSRRSK KTKEFIDAKF ACSRYGVTPE SDSGSSRRPS VKKTDCKACM HVKRKPDGKW  120
IIHEFIKEHN HELVPALAYH FRIHRNMKLA EKNNIDILHA VSERTRKMYV EMSRQSSSCQ  180
NIGSFLGDIN YQFDRGQYLA LDEGDAQVML EYFKHVQKES PNFFYSIDLN EEQRLRNLFW  240
IDAKSINDYL SFNDVVSFDT TYIKSNDKLP FAPFVGVNHH SQPILLGCAL LADETKPTFV  300
WLMKTWLRAM GGQAPKVIIT DQDKALKTAI EEVFPNVRHC FSLWHILESI PENLSFVIKK  360
HQNFLPKFNK CIFKSWTDEQ FDMRWWKMVS ICELQDDLWF QSLYEDRKKW VPTYMGDAFL  420
AGMSTPQRSE SMNFFFDKYI HKKITLKEFV KQYGIILQNR YDEEAIADFD TLHKQPALKS  480
PSPWEKQMST VYTHAIFKKF QVEVLGVAGC QSRIEAGDGT IAKFIVQDYE KDEEFLVTWN  540
ELSSEVSCFC RLFEYKGFLC RHALSVLQRC GCSCVPSHYI LKRWTKDAKI KELMADRTRR  600
TQTRVQRYND LCKRAIDLSE KGSLSEESYN VVFRTLVDAL KNCVLVNNSN NNGAETSSNA  660
YGLREAEENQ VPLALKPNKK RNAARKRKGQ LEQDVILVDA QDSLQQMDNL STDAITLNGY  720
YGTQQNVQGL QVQLNLMEPP QDGYYVNQHS MQGLGPLNSM GPSHDGFFGT QQGIHGLGGQ  780
LEFRRATTFG YSLQDEPDPQ FHGNSSRNT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G132100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269|PubMed:18033885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351770.0AC235177.1 Glycine max strain Williams 82 clone GM_WBb0007H11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006605993.10.0protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
RefseqXP_006605994.10.0protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
RefseqXP_014628433.10.0protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
RefseqXP_025983273.10.0protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
SwissprotQ9SWG30.0FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBLK7N3870.0K7N387_SOYBN; Uncharacterized protein
STRINGGLYMA20G26810.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Representative plantOGRP1345734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.10.0FAR1 family protein
Publications ? help Back to Top
  1. Domergue F, et al.
    Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition.
    Plant Physiol., 2010. 153(4): p. 1539-54
    [PMID:20571114]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Wang C, et al.
    SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes.
    J Genet Genomics, 2015. 42(4): p. 161-8
    [PMID:25953354]
  4. Wang W, et al.
    A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis.
    J Integr Plant Biol, 2016. 58(1): p. 91-103
    [PMID:25989254]
  5. Ma L, et al.
    Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1.
    Mol Plant, 2016. 9(4): p. 541-57
    [PMID:26714049]
  6. Siddiqui H,Khan S,Rhodes BM,Devlin PF
    FHY3 and FAR1 Act Downstream of Light Stable Phytochromes.
    Front Plant Sci, 2016. 7: p. 175
    [PMID:26941752]
  7. Liu L,Li B,Liu X
    FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis.
    Plant Signal Behav, 2016. 11(10): p. e1238545
    [PMID:27660915]
  8. Ma L,Xue N,Fu X,Zhang H,Li G
    Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar.
    New Phytol., 2017. 213(4): p. 1682-1696
    [PMID:27859295]
  9. Liu Y, et al.
    Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1.
    Plant Cell, 2017. 29(9): p. 2269-2284
    [PMID:28842534]
  10. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]