PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 308aa MW: 35121.5 Da PI: 6.7829

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.20G117000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.1	4.1e-18	20	67	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll+++++++G g+W+ a+ g++Rt+k+c++rw++yl Glyma.20G117000.1.p 20 RGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRTGKSCRLRWLNYL 67 89********************************************97 PP
2	Myb_DNA-binding	52.6	1.1e-16	73	116	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Glyma.20G117000.1.p 73 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 116 7999****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.762	15	67	IPR017930	Myb domain
SuperFamily	SSF46689	3.74E-31	18	114	IPR009057	Homeodomain-like
SMART	SM00717	2.4E-15	19	69	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-16	20	67	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-23	21	74	IPR009057	Homeodomain-like
CDD	cd00167	5.62E-12	22	67	No hit	No description
PROSITE pattern	PS00175	0	35	44	IPR001345	Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profile	PS51294	25.751	68	122	IPR017930	Myb domain
SMART	SM00717	2.7E-15	72	120	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-15	73	116	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-23	75	121	IPR009057	Homeodomain-like
CDD	cd00167	1.31E-11	77	116	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008152	Biological Process	metabolic process
GO:0003677	Molecular Function	DNA binding
GO:0003824	Molecular Function	catalytic activity

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MSTIAKRDLS CNEEESELRR GPWTLEEDSL LIHYIARHGE GRWNMLAKSA GLKRTGKSCR 60 LRWLNYLKPD IKRGNLTPQE QLLILELHSK WGNRWSKIAQ HLPGRTDNEI KNYWRTRVQK 120 QARQLNIESG SKRFIDAVKC FWMPRLLQKM EQSNSPSPQS SMTTMMNLGN SGEASMSSMS 180 SSFNINPSMS SSSSPPQRKF IMDDANHFST MSNPINPSPD SFQFSQPLEI SEHPKSPPNV 240 FENNVCSYPI QDNCYLDTNN YGMEGINMDP LSAMDTYDFS QFDFQTAGNG WMLDSMGDST 300 LWNMDAM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	6e-26	17	122	4	108	B-MYB
1h8a_C	6e-26	17	122	24	128	MYB TRANSFORMING PROTEIN
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269\|PubMed:19529828}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269\|PubMed:19529828}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.20G117000.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:19529828}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003555909.1	0.0	transcription factor MYB62
Swissprot	Q9C9G7	8e-85	MYB62_ARATH; Transcription factor MYB62
TrEMBL	K7N2X3	0.0	K7N2X3_SOYBN; Uncharacterized protein
STRING	GLYMA20G25110.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1639	34	94
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68320.1	2e-83	myb domain protein 62

Link Out ? help Back to Top
Phytozome	Glyma.20G117000.1.p
Entrez Gene	100775834

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]